RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 MLLT1Q03111 559 aaPredicted RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 SP140Q13342 867 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 ZNHIT3Q15649 155 aaPredicted RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 GPR68Q15743 365 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 KLHL35Q6PF15 583 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 CCDC116Q8IYX3 515 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 BCL7CQ8WUZ0 217 aaPredicted RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 RGMAQ96B86 450 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 CEP295NLQ96MC4 621 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 SORBS1Q9BX66 1292 aaKnown RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 NAA50Q9GZZ1 169 aaKnown RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 POLE4Q9NR33 117 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 PCDHGA8Q9Y5G5 932 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 URADA6NGE7 173 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 IGLON5A6NGN9 336 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 ZNF860A6NHJ4 632 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 OR7A17O14581 309 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 C6P13671 934 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 CPN2P22792 545 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 ZSWIM7Q19AV6 140 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 TRAM1L1Q8N609 369 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 HDAC2Q92769 488 aaKnown RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 TMEM165Q9HC07 324 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 TAS2R9Q9NYW1 312 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 PCDHGB5Q9Y5G0 923 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 EDDM13A0A1B0GTR0 161 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 RPLP0P05388 317 aaKnown RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 HMGA1P17096 107 aaKnown RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 STX4Q12846 297 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 COMMD6Q7Z4G1 85 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 TAF8Q7Z7C8 310 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 SRFBP1Q8NEF9 429 aaKnown RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 NEIL2Q969S2 332 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 AHCYL2Q96HN2 611 aaKnown RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 CNOT11Q9UKZ1 510 aaKnown RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 H1F0P07305 194 aaKnown RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 CRISP3P54108 245 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 PRR23CQ6ZRP0 262 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 PIWIL3Q7Z3Z3 882 aaKnown RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 TCEANCQ8N8B7 351 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 HERC2P3Q9BVR0 1158 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 FUNDC2Q9BWH2 189 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 PCDHB11Q9Y5F2 797 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 SPIN1Q9Y657 262 aaPredicted RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 SLC1A7O00341 560 aa15.08■□□□□ 0.01
CUX1-211ENST00000546411 CTSAP10619 480 aa15.08■□□□□ 0.01
CUX1-211ENST00000546411 TSTQ16762 297 aaKnown RBP15.08■□□□□ 0.01
CUX1-211ENST00000546411 CRTC2Q53ET0 693 aaPredicted RBP15.08■□□□□ 0.01
CUX1-211ENST00000546411 DCUN1D3Q8IWE4 304 aa15.08■□□□□ 0.01
CUX1-211ENST00000546411 FAM129BQ96TA1 746 aa15.08■□□□□ 0.01
CUX1-211ENST00000546411 LHPPQ9H008 270 aa15.08■□□□□ 0.01
CUX1-211ENST00000546411 FZD3Q9NPG1 666 aa15.08■□□□□ 0.01
CUX1-211ENST00000546411 TUBA8Q9NY65 449 aaPredicted RBP15.08■□□□□ 0.01
CUX1-211ENST00000546411 COLEC10Q9Y6Z7 277 aa15.08■□□□□ 0.01
CUX1-211ENST00000546411 TARM1B6A8C7 271 aa15.08■□□□□ 0
CUX1-211ENST00000546411 CKMT1AP12532 417 aa15.08■□□□□ 0
CUX1-211ENST00000546411 CD9P21926 228 aa15.08■□□□□ 0
CUX1-211ENST00000546411 SLC5A2P31639 672 aa15.08■□□□□ 0
CUX1-211ENST00000546411 MLLT10P55197 1068 aa15.08■□□□□ 0
CUX1-211ENST00000546411 TPTEP56180 551 aa15.08■□□□□ 0
CUX1-211ENST00000546411 ITGA1P56199 1179 aa15.08■□□□□ 0
CUX1-211ENST00000546411 BTN3A2P78410 334 aa15.08■□□□□ 0
CUX1-211ENST00000546411 ILF3Q12906 894 aaKnown RBP eCLIP15.08■□□□□ 04e-7■■■■□ 21.7
CUX1-211ENST00000546411 CEP78Q5JTW2 689 aa15.08■□□□□ 0
CUX1-211ENST00000546411 HLA-DQA1Q5Y7H0 255 aa15.08■□□□□ 0
CUX1-211ENST00000546411 DUS1LQ6P1R4 473 aaKnown RBP15.08■□□□□ 0
CUX1-211ENST00000546411 LAPTM4BQ86VI4 370 aa15.08■□□□□ 0
CUX1-211ENST00000546411 VRK3Q8IV63 474 aa15.08■□□□□ 0
CUX1-211ENST00000546411 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.08■□□□□ 0
CUX1-211ENST00000546411 BADQ92934 168 aa15.08■□□□□ 0
CUX1-211ENST00000546411 MACROD1Q9BQ69 325 aa15.08■□□□□ 0
CUX1-211ENST00000546411 TTLL2Q9BWV7 592 aa15.08■□□□□ 0
CUX1-211ENST00000546411 TNFRSF21O75509 655 aa15.08■□□□□ 0
CUX1-211ENST00000546411 HLA-DQA2P01906 255 aa15.08■□□□□ 0
CUX1-211ENST00000546411 TXNL4AP83876 142 aaKnown RBP15.08■□□□□ 0
CUX1-211ENST00000546411 ST3GAL4Q11206 333 aa15.08■□□□□ 0
CUX1-211ENST00000546411 KRT74Q7RTS7 529 aa15.08■□□□□ 0
CUX1-211ENST00000546411 FGD2Q7Z6J4 655 aa15.08■□□□□ 0
CUX1-211ENST00000546411 ZNF655Q8N720 491 aaPredicted RBP15.08■□□□□ 0
CUX1-211ENST00000546411 RETREG1Q9H6L5 497 aa15.08■□□□□ 0
CUX1-211ENST00000546411 SLC22A1O15245 554 aa15.07■□□□□ 0
CUX1-211ENST00000546411 PSIP1O75475 530 aaKnown RBP15.07■□□□□ 0
CUX1-211ENST00000546411 MCCD1P59942 119 aaPredicted RBP15.07■□□□□ 0
CUX1-211ENST00000546411 NPRL3Q12980 569 aa15.07■□□□□ 0
CUX1-211ENST00000546411 EXOC3L2Q2M3D2 409 aa15.07■□□□□ 0
CUX1-211ENST00000546411 ERN2Q76MJ5 926 aaKnown RBP15.07■□□□□ 0
CUX1-211ENST00000546411 CHERPQ8IWX8 916 aaKnown RBP15.07■□□□□ 0
CUX1-211ENST00000546411 FAM86B1Q8N7N1 296 aa15.07■□□□□ 0
CUX1-211ENST00000546411 PDPRQ8NCN5 879 aa15.07■□□□□ 0
CUX1-211ENST00000546411 CIDECQ96AQ7 238 aaPredicted RBP15.07■□□□□ 0
CUX1-211ENST00000546411 KCNK12Q9HB15 430 aa15.07■□□□□ 0
CUX1-211ENST00000546411 PHF24Q9UPV7 400 aa15.07■□□□□ 0
CUX1-211ENST00000546411 HIDE1A8MVS5 230 aa15.07■□□□□ 0
CUX1-211ENST00000546411 B3GALT4O96024 378 aa15.07■□□□□ 0
CUX1-211ENST00000546411 NCS1P62166 190 aa15.07■□□□□ 0
CUX1-211ENST00000546411 COX10Q12887 443 aa15.07■□□□□ 0
CUX1-211ENST00000546411 ZNF829Q3KNS6 432 aaPredicted RBP15.07■□□□□ 0
CUX1-211ENST00000546411 SPATS1Q496A3 300 aa15.07■□□□□ 0
CUX1-211ENST00000546411 OR5AR1Q8NGP9 310 aa15.07■□□□□ 0
CUX1-211ENST00000546411 GPR151Q8TDV0 419 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms