RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SHQ1Q6PI26 577 aaKnown RBP15.62■□□□□ 0.09
COL4A1-204ENST00000543140 SLC9B2Q86UD5 537 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 LINC01555Q8NAE3 123 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 TP53I13Q8NBR0 393 aaPredicted RBP15.62■□□□□ 0.09
COL4A1-204ENST00000543140 SGCDQ92629 289 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 MRPL38Q96DV4 380 aaKnown RBP15.62■□□□□ 0.09
COL4A1-204ENST00000543140 RDH12Q96NR8 316 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 SLC6A16Q9GZN6 736 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 POLR1BQ9H9Y6 1135 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 MIEF1Q9NQG6 463 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 PHPT1Q9NRX4 125 aaPredicted RBP15.62■□□□□ 0.09
COL4A1-204ENST00000543140 CORO2BQ9UQ03 480 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 MAP4K5Q9Y4K4 846 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 ERGP11308 486 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 PPIBP23284 216 aaKnown RBP15.62■□□□□ 0.09
COL4A1-204ENST00000543140 MVDP53602 400 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 PDE7AQ13946 482 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 MLF2Q15773 248 aaPredicted RBP15.62■□□□□ 0.09
COL4A1-204ENST00000543140 NEDD8Q15843 81 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 ZNF776Q68DI1 518 aaPredicted RBP15.62■□□□□ 0.09
COL4A1-204ENST00000543140 KCTD8Q6ZWB6 473 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 CYP4Z1Q86W10 505 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 HORMAD1Q86X24 394 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 FAM20CQ8IXL6 584 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 C11orf65Q8NCR3 313 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 POP5Q969H6 163 aaKnown RBP15.62■□□□□ 0.09
COL4A1-204ENST00000543140 AIF1LQ9BQI0 150 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 ASPSCR1Q9BZE9 553 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 ABCG4Q9H172 646 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 MSRAQ9UJ68 235 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 C3orf18Q9UK00 162 aa15.62■□□□□ 0.09
COL4A1-204ENST00000543140 LOC100130705A0A1B0GUX0 176 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 A0A1W2PPV9 198 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 GPR37L1O60883 481 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 GCM2O75603 506 aaPredicted RBP15.61■□□□□ 0.09
COL4A1-204ENST00000543140 SEMG1P04279 462 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 CYP4B1P13584 511 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 SOAT1P35610 550 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 ARHGAP19Q14CB8 494 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 ADCK2Q7Z695 626 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 CLVS1Q8IUQ0 354 aaPredicted RBP15.61■□□□□ 0.09
COL4A1-204ENST00000543140 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.61■□□□□ 0.09
COL4A1-204ENST00000543140 SMPDL3AQ92484 453 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 TM9SF3Q9HD45 589 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 ORC6Q9Y5N6 252 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 BRWD1Q9NSI6 2320 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 CCDC88CQ9P219 2028 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 SNRNP200O75643 2136 aaKnown RBP15.61■□□□□ 0.09
COL4A1-204ENST00000543140 PRAMEF33A0A0G2JMD5 474 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 OR52A4PA6NMU1 304 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 SLC31A1O15431 190 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 STATHP02808 62 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 TNFRSF1BP20333 461 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 IGFBP5P24593 272 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 CHI3L1P36222 383 aaPredicted RBP15.61■□□□□ 0.09
COL4A1-204ENST00000543140 ALDH9A1P49189 494 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 HLCSP50747 726 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 CCR8P51685 355 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 RPS21P63220 83 aaKnown RBP15.61■□□□□ 0.09
COL4A1-204ENST00000543140 SLC5A12Q1EHB4 618 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 CTU2Q2VPK5 515 aaKnown RBP15.61■□□□□ 0.09
COL4A1-204ENST00000543140 KHDRBS2Q5VWX1 349 aaKnown RBP15.61■□□□□ 0.09
COL4A1-204ENST00000543140 RNF130Q86XS8 419 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 SLC17A9Q9BYT1 436 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 LMCD1Q9NZU5 365 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 TAAR2Q9P1P5 351 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 C5AR2Q9P296 337 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 SAMHD1Q9Y3Z3 626 aaKnown RBP15.61■□□□□ 0.09
COL4A1-204ENST00000543140 GPSM3Q9Y4H4 160 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 SNX8Q9Y5X2 465 aa15.61■□□□□ 0.09
COL4A1-204ENST00000543140 DNMT3AQ9Y6K1 912 aaPredicted RBP15.61■□□□□ 0.09
COL4A1-204ENST00000543140 TBC1D3DA0A087WVF3 549 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TBC1D3IA0A087WXS9 549 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TBC1D3EA0A087X179 549 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TBC1D3KA0A087X1G2 549 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 A0A0G2JN53 185 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 A0A1W2PRB8 838 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TBC1D3FA6NER0 549 aaPredicted RBP15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TBC1D3LB9A6J9 549 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 SUV39H1O43463 412 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 OR1F1O43749 312 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 SERPIND1P05546 499 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TBC1D3HP0C7X1 549 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 HOXB6P17509 224 aaKnown RBP15.6■□□□□ 0.09
COL4A1-204ENST00000543140 CDK9P50750 372 aaKnown RBP15.6■□□□□ 0.09
COL4A1-204ENST00000543140 ARHGDIAP52565 204 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 EPS8Q12929 822 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 ZBED5Q49AG3 693 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TMEM196Q5HYL7 178 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TBC1D3GQ6DHY5 549 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TBC1D3CQ6IPX1 549 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TMEM184AQ6ZMB5 413 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 FAM124AQ86V42 546 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 ADGRF3Q8IZF5 1079 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TBC1D3Q8IZP1 549 aaPredicted RBP15.6■□□□□ 0.09
COL4A1-204ENST00000543140 GOT1L1Q8NHS2 421 aaPredicted RBP15.6■□□□□ 0.09
COL4A1-204ENST00000543140 ADAMTS16Q8TE57 1224 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 ADPRHL2Q9NX46 363 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 TAS2R9Q9NYW1 312 aa15.6■□□□□ 0.09
COL4A1-204ENST00000543140 PDP1Q9P0J1 537 aaPredicted RBP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms