RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 C1orf189Q5VU69 101 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 ABHD17CQ6PCB6 329 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 RGS9BPQ6ZS82 235 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 RNF165Q6ZSG1 346 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 TRIM46Q7Z4K8 759 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 DSELQ8IZU8 1212 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 RGMAQ96B86 450 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 FAR2Q96K12 515 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 GBP5Q96PP8 586 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 KCNC2Q96PR1 638 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 HBEGFQ99075 208 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 VPS29Q9UBQ0 182 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 SLC12A4Q9UP95 1085 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 MDC1Q14676 2089 aaKnown RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 A0A088AWK7 358 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 A0A0A6YYC8 382 aaPredicted RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 I3L1I5 382 aaPredicted RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 GALR3O60755 368 aaPredicted RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 NSA2O95478 260 aaKnown RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 ETHE1O95571 254 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 IL1RNP18510 177 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 ZNF10P21506 573 aaPredicted RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 AGXTP21549 392 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 RAP1GDS1P52306 607 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 SNRPNP63162 240 aaKnown RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 DCDP81605 110 aaKnown RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 DEFB134Q4QY38 66 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 ZNF385CQ66K41 422 aaPredicted RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 SCIMPQ6UWF3 145 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 TIPARPQ7Z3E1 657 aaKnown RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 ZFAND4Q86XD8 727 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 NLGN4XQ8N0W4 816 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 ESX1Q8N693 406 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 NLGN4YQ8NFZ3 816 aaPredicted RBP16.25■□□□□ 0.19
LIG1-204ENST00000542460 OR9A4Q8NGU2 314 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 TWIST2Q8WVJ9 160 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 C7orf26Q96N11 449 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 CCT7Q99832 543 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 TBCDQ9BTW9 1192 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 ACPTQ9BZG2 426 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 PFDN4Q9NQP4 134 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 AHSPQ9NZD4 102 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 PADI1Q9ULC6 663 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 NAALAD2Q9Y3Q0 740 aa16.25■□□□□ 0.19
LIG1-204ENST00000542460 TEX51A0A1B0GUA7 166 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 C4orf51C9J302 202 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 H0YIG0 161 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 SAP18O00422 153 aaKnown RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 KLHL18O94889 574 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 SEMA3DO95025 777 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 PIM1P11309 404 aaPredicted RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 MDH1P40925 334 aaKnown RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 TSFMP43897 325 aaKnown RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 BTN3A2P78410 334 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 GUCY1A3Q02108 690 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 AP5B1Q2VPB7 878 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 ZNF517Q6ZMY9 492 aaPredicted RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 PRSS41Q7RTY9 318 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 UBE3DQ7Z6J8 389 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 CRLF3Q8IUI8 442 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 DDIASQ8IXT1 998 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 DTWD1Q8N5C7 304 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 GATA6Q92908 595 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 MMABQ96EY8 250 aaPredicted RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 C17orf62Q9BQA9 187 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 ROGDIQ9GZN7 287 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 TUBB1Q9H4B7 451 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 ZNF304Q9HCX3 659 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 LHX9Q9NQ69 397 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 PRDM7Q9NQW5 492 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 PNPOQ9NVS9 261 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 DKK4Q9UBT3 224 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 SLC28A1O00337 649 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 PIP5K1BO14986 540 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 RAD1O60671 282 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 ONECUT2O95948 504 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 OR1D4P47884 311 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 IMPG1Q17R60 797 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 NKAIN1Q4KMZ8 207 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 OR4C11Q6IEV9 310 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 DTX1Q86Y01 620 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 PDSS2Q86YH6 399 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 METTL27Q8N6F8 245 aaPredicted RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 PIWIL2Q8TC59 973 aaKnown RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 FGF11Q92914 225 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 MR1Q95460 341 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 COL26A1Q96A83 441 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 AKIRIN1Q9H9L7 192 aaPredicted RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 COPS7BQ9H9Q2 264 aaPredicted RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 CLK4Q9HAZ1 481 aaKnown RBP16.24■□□□□ 0.19
LIG1-204ENST00000542460 FAM53CQ9NYF3 392 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 MAU2Q9Y6X3 613 aa16.24■□□□□ 0.19
LIG1-204ENST00000542460 KMT2BQ9UMN6 2715 aaPredicted RBP16.23■□□□□ 0.19
LIG1-204ENST00000542460 A0A0G2JN53 185 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 C1QTNF9BB2RNN3 333 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 SLCO1B7G3V0H7 640 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 SGK494L7N484 410 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 PLPP1O14494 284 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 RGS14O43566 566 aa16.23■□□□□ 0.19
LIG1-204ENST00000542460 B3GALT4O96024 378 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms