RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 VPS29Q9UBQ0 182 aa8.89□□□□□ -0.99
DDX55-208ENST00000541259 APOBEC2Q9Y235 224 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 RUVBL1Q9Y265 456 aaKnown RBP8.89□□□□□ -0.99
DDX55-208ENST00000541259 SDK2Q58EX2 2172 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 FAM149AA5PLN7 773 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 PLPP1O14494 284 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 LSM1O15116 133 aaKnown RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 SRPX2O60687 465 aaPredicted RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 DNAJB6O75190 326 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 SEC22BO75396 215 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 KLHL18O94889 574 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 PRR35P0CG20 571 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 ZNF888P0CJ79 500 aaPredicted RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 SMIM10L1P0DMW3 83 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 HSD3B1P14060 373 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 ITIH1P19827 911 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 HSD3B2P26439 372 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 GSTM2P28161 218 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 SERPINB1P30740 379 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 ETV5P41161 510 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 ARFIP2P53365 341 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 PLA2G16P53816 162 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 RAB8AP61006 207 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 RAE1P78406 368 aaKnown RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 PHEXP78562 749 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 ZNF33BQ06732 778 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 RGS1Q08116 209 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 TUBB3Q13509 450 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 CUL3Q13618 768 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 KIAA0040Q15053 153 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 AP5B1Q2VPB7 878 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 ADPRMQ3LIE5 342 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 RFTN2Q52LD8 501 aaPredicted RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 OXLD1Q5BKU9 147 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 C6orf136Q5SQH8 315 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 C10orf62Q5T681 223 aaPredicted RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 TMEM198Q66K66 360 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 NXNQ6DKJ4 435 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 RIPOR1Q6ZS17 1223 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 CHSY3Q70JA7 882 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 LARP4Q71RC2 724 aaKnown RBP eCLIP8.88□□□□□ -0.99
DDX55-208ENST00000541259 PRSS41Q7RTY9 318 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 SHISA5Q8N114 240 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 ARHGEF39Q8N4T4 335 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 C1orf52Q8N6N3 182 aaKnown RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 ZNF655Q8N720 491 aaPredicted RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 BMPERQ8N8U9 685 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 CAMKVQ8NCB2 501 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 AGBL5Q8NDL9 886 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 UTP15Q8TED0 518 aaKnown RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 CHTF18Q8WVB6 975 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 N4BP2L2Q92802 583 aaPredicted RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 PMEPA1Q969W9 287 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 SMIM10Q96HG1 83 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 SEC16BQ96JE7 1060 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 DEPDC7Q96QD5 511 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 SERPINI1Q99574 410 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 CTRCQ99895 268 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 C17orf62Q9BQA9 187 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 ZNF717Q9BY31 904 aaPredicted RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 REXO4Q9GZR2 422 aaKnown RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 NSRP1Q9H0G5 558 aaKnown RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 LRTM1Q9HBL6 345 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 LHX9Q9NQ69 397 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 PRDM7Q9NQW5 492 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 IRAK4Q9NWZ3 460 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 PGPEP1Q9NXJ5 209 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 PPT2Q9UMR5 302 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 G3BP2Q9UN86 482 aaKnown RBP8.88□□□□□ -0.99
DDX55-208ENST00000541259 CLCA2Q9UQC9 943 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 WDFY3Q8IZQ1 3526 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 PIEZO1Q92508 2521 aa8.88□□□□□ -0.99
DDX55-208ENST00000541259 HYKKA2RU49 373 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 FITM1A5D6W6 292 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 E9PBE3 544 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 NPIPB8E9PQR5 432 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 ERVH48-1M5A8F1 160 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 ERI3O43414 337 aaKnown RBP8.87□□□□□ -0.99
DDX55-208ENST00000541259 KLHL41O60662 606 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 EEDO75530 441 aaKnown RBP8.87□□□□□ -0.99
DDX55-208ENST00000541259 OR2B3O76000 313 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 RSL1D1O76021 490 aaKnown RBP8.87□□□□□ -0.99
DDX55-208ENST00000541259 TIAF1O95411 115 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 FAM107AO95990 144 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 GBAP04062 536 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 KLK1P06870 262 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 ALDOCP09972 364 aaKnown RBP8.87□□□□□ -0.99
DDX55-208ENST00000541259 SLC35G6P0C7Q6 338 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 MSL3P1P0C860 447 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 CDK4P11802 303 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 LBPP18428 481 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 PRPH2P23942 346 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 BSGP35613 385 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 ITGA1P56199 1179 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 RPL38P63173 70 aaKnown RBP8.87□□□□□ -0.99
DDX55-208ENST00000541259 MC2RQ01718 297 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 ACY1Q03154 408 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 TARDBPQ13148 414 aaKnown RBP eCLIP8.87□□□□□ -0.99
DDX55-208ENST00000541259 ATP6AP1LQ52LC2 224 aa8.87□□□□□ -0.99
DDX55-208ENST00000541259 TCTE1Q5JU00 501 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms