RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 LBPP18428 481 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 BCL3P20749 454 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 FEN1P39748 380 aaKnown RBP4.75□□□□□ -1.65
YBX3-210ENST00000540975 ATP4BP51164 291 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 NDUFV3P56181 108 aaKnown RBP4.75□□□□□ -1.65
YBX3-210ENST00000540975 PEX6Q13608 980 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 GRB14Q14449 540 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 C15orf32Q32M92 178 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 TRMT11Q7Z4G4 463 aaKnown RBP4.75□□□□□ -1.65
YBX3-210ENST00000540975 SPATA21Q7Z572 469 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 MARCH9Q86YJ5 346 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 HPS6Q86YV9 775 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 ZC3H3Q8IXZ2 948 aaKnown RBP4.75□□□□□ -1.65
YBX3-210ENST00000540975 ST6GALNAC6Q969X2 333 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 RADILQ96JH8 1075 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 RAB3IPQ96QF0 476 aaPredicted RBP4.75□□□□□ -1.65
YBX3-210ENST00000540975 ADNPQ9H2P0 1102 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 UBQLN3Q9H347 655 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 JPT2Q9H910 190 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 CHCHD3Q9NX63 227 aaKnown RBP4.75□□□□□ -1.65
YBX3-210ENST00000540975 PILRAQ9UKJ1 303 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 SATB2Q9UPW6 733 aa4.75□□□□□ -1.65
YBX3-210ENST00000540975 H7C0S8 307 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 TNFSF12O43508 249 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 ANKRD34CP0C6C1 535 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 CALRP27797 417 aaKnown RBP4.74□□□□□ -1.65
YBX3-210ENST00000540975 ABCE1P61221 599 aaKnown RBP4.74□□□□□ -1.65
YBX3-210ENST00000540975 SHEQ5VZ18 495 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 TMEM182Q6ZP80 229 aaPredicted RBP4.74□□□□□ -1.65
YBX3-210ENST00000540975 SLFN11Q7Z7L1 901 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 TIGD4Q8IY51 512 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 DND1Q8IYX4 353 aaKnown RBP4.74□□□□□ -1.65
YBX3-210ENST00000540975 SNRNP27Q8WVK2 155 aaKnown RBP4.74□□□□□ -1.65
YBX3-210ENST00000540975 ANP32BQ92688 251 aaKnown RBP4.74□□□□□ -1.65
YBX3-210ENST00000540975 C11orf52Q96A22 123 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 TRIM44Q96DX7 344 aaPredicted RBP4.74□□□□□ -1.65
YBX3-210ENST00000540975 FERMT1Q9BQL6 677 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 CCDC28BQ9BUN5 200 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 C5orf66Q9H5L9 145 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 LMAN1LQ9HAT1 526 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 ANAPC5Q9UJX4 755 aa4.74□□□□□ -1.65
YBX3-210ENST00000540975 MLNRO43193 412 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 APOA4P06727 396 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 FAM58BPP0C7Q3 252 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 DLATP10515 647 aaKnown RBP4.73□□□□□ -1.65
YBX3-210ENST00000540975 GOT1P17174 413 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 OR3A3P47888 321 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 CAPZA1P52907 286 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 LRRC37A5PQ49AS3 106 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 TXNRD3NBQ6F5E7 133 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 Q6ZVQ6 151 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 FBXL16Q8N461 479 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 ERP27Q96DN0 273 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 C1orf147Q96MC9 270 aaPredicted RBP4.73□□□□□ -1.65
YBX3-210ENST00000540975 TSSK2Q96PF2 358 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 PSMB7Q99436 277 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 INPP5KQ9BT40 448 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 FNDC4Q9H6D8 234 aaPredicted RBP4.73□□□□□ -1.65
YBX3-210ENST00000540975 RAB9BQ9NP90 201 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 TSPAN16Q9UKR8 245 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 NCKAP1Q9Y2A7 1128 aa4.73□□□□□ -1.65
YBX3-210ENST00000540975 C5orf52A6NGY3 159 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 LMO7DNF2Z398 122 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 PDHXO00330 501 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 PGRMC2O15173 223 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 INPP4BO15327 924 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 SIGLEC5O15389 551 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 GPRIN2O60269 458 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 QDPRP09417 244 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 SP9P0CG40 484 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 EEF2P13639 858 aaKnown RBP4.72□□□□□ -1.65
YBX3-210ENST00000540975 GP9P14770 177 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 CTNNA2P26232 953 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 IRX3P78415 501 aaPredicted RBP4.72□□□□□ -1.65
YBX3-210ENST00000540975 MLF2Q15773 248 aaPredicted RBP4.72□□□□□ -1.65
YBX3-210ENST00000540975 CDO1Q16878 200 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 C15orf52Q6ZUT6 534 aaKnown RBP4.72□□□□□ -1.65
YBX3-210ENST00000540975 CEACAM19Q7Z692 300 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 PHLDB2Q86SQ0 1253 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 CATSPER3Q86XQ3 398 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 C4orf32Q8N8J7 132 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 TSPAN18Q96SJ8 248 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 PCDHB18PQ96TA0 734 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 NACAP1Q9BZK3 213 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 C3orf14Q9HBI5 128 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 TP53TG3Q9ULZ0 132 aa4.72□□□□□ -1.65
YBX3-210ENST00000540975 HTR3EA5X5Y0 456 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 TCP10L2B9ZVM9 353 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 OGTO15294 1046 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 VIMP08670 466 aaKnown RBP4.71□□□□□ -1.66
YBX3-210ENST00000540975 TIA1P31483 386 aaKnown RBP eCLIP4.71□□□□□ -1.662e-7■■□□□ 14.2
YBX3-210ENST00000540975 SRPXP78539 464 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 FAM46CQ5VWP2 391 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 SEL1L3Q68CR1 1132 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 TCEAL6Q6IPX3 200 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 KLHL10Q6JEL2 608 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 SPATA19Q7Z5L4 167 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 CSNK1G2-AS1Q8NCQ2 148 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 CD99L2Q8TCZ2 262 aa4.71□□□□□ -1.66
YBX3-210ENST00000540975 RIT1Q92963 219 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms