RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CLEC3AO75596 197 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 SNX4O95219 450 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 IFNA6P05013 189 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 VLDLRP98155 873 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 SYT16Q17RD7 645 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 RAB41Q5JT25 222 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 OR2T5Q6IEZ7 315 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 TTLL10Q6ZVT0 673 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 OR2T29Q8NH02 315 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 OR5P2Q8WZ92 322 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 DAZLQ92904 295 aaKnown RBP13.59□□□□□ -0.23
USP3-204ENST00000540797 RPL36Q9Y3U8 105 aaKnown RBP13.59□□□□□ -0.23
USP3-204ENST00000540797 USP3Q9Y6I4 520 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 RFXAPO00287 272 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 PRSS56P0CW18 603 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 NR2C1P13056 603 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 PER3P56645 1201 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 RPS15P62841 145 aaKnown RBP13.59□□□□□ -0.23
USP3-204ENST00000540797 IQCCQ4KMZ1 466 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 STEAP4Q687X5 459 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 FIGLAQ6QHK4 219 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 FAM131AQ6UXB0 335 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 ZNF761Q86XN6 746 aaPredicted RBP13.59□□□□□ -0.23
USP3-204ENST00000540797 LINC00471Q8N535 108 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 CANT1Q8WVQ1 401 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 SEC61A2Q9H9S3 476 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 CENPMQ9NSP4 180 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 XRCC1P18887 633 aaPredicted RBP13.59□□□□□ -0.23
USP3-204ENST00000540797 BMP8BP34820 402 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 DSC1Q08554 894 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 QPRTQ15274 297 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 UNC50Q53HI1 259 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 TCEAL6Q6IPX3 200 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 REEP3Q6NUK4 255 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 ATG14Q6ZNE5 492 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 BMP8AQ7Z5Y6 402 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 TBX5Q99593 518 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 TBC1D17Q9HA65 648 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 ITGB4P16144 1822 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 SSNA1O43805 119 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 CREG1O75629 220 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 RPA4Q13156 261 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 FLYWCH1Q4VC44 716 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 PRPF38BQ5VTL8 546 aaKnown RBP13.59□□□□□ -0.23
USP3-204ENST00000540797 SLCO6A1Q86UG4 719 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 CHERPQ8IWX8 916 aaKnown RBP13.59□□□□□ -0.23
USP3-204ENST00000540797 PNPLA2Q96AD5 504 aa13.59□□□□□ -0.23
USP3-204ENST00000540797 C1orf226A1L170 272 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 EME2A4GXA9 379 aaPredicted RBP13.58□□□□□ -0.23
USP3-204ENST00000540797 WASH4PA8MWX3 477 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 EI24O14681 340 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 PROS1P07225 676 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 IL12RB1P42701 662 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 RPS6KA3P51812 740 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 DIO3P55073 304 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 LYSMD4Q5XG99 296 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 CYS1Q717R9 158 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 UBE2J2Q8N2K1 259 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 IL26Q9NPH9 171 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 SLC7A8Q9UHI5 535 aa13.58□□□□□ -0.23
USP3-204ENST00000540797 VIRMAQ69YN4 1812 aaKnown RBP13.58□□□□□ -0.24
USP3-204ENST00000540797 MYOCOSA0A1B0GUC4 107 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 GABRA3P34903 492 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 FAUP35544 74 aaKnown RBP13.58□□□□□ -0.24
USP3-204ENST00000540797 PGGT1BP53609 377 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 DAG1Q14118 895 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 PERM1Q5SV97 790 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 C1orf189Q5VU69 101 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 ZFAND4Q86XD8 727 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.58□□□□□ -0.24
USP3-204ENST00000540797 RHBDD1Q8TEB9 315 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 EZH1Q92800 747 aaPredicted RBP13.58□□□□□ -0.24
USP3-204ENST00000540797 HSH2DQ96JZ2 352 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 CHCHD6Q9BRQ6 235 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 PELOQ9BRX2 385 aaKnown RBP13.58□□□□□ -0.24
USP3-204ENST00000540797 PRKAR1AP10644 381 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 ATP4BP51164 291 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 CSTF1Q05048 431 aaKnown RBP13.58□□□□□ -0.24
USP3-204ENST00000540797 RASGEF1BQ0VAM2 473 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 GRM7Q14831 915 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 SLC5A9Q2M3M2 681 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 TMEM35AQ53FP2 167 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 RABL3Q5HYI8 236 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 DPPA4Q7L190 304 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 TIAM2Q8IVF5 1701 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 CBARPQ8N350 705 aaPredicted RBP13.58□□□□□ -0.24
USP3-204ENST00000540797 OR6N1Q8NGY5 312 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 THAP3Q8WTV1 239 aaPredicted RBP13.58□□□□□ -0.24
USP3-204ENST00000540797 RTP4Q96DX8 246 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 PYURFQ96I23 114 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 COPS4Q9BT78 406 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 EBF2Q9HAK2 575 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 LINC01553A4QN01 128 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 NPPAP01160 153 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 P2RY2P41231 377 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 SLC6A9P48067 706 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 CAMK1Q14012 370 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 GRIN2CQ14957 1233 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 RNASE12Q5GAN4 147 aaKnown RBP13.58□□□□□ -0.24
USP3-204ENST00000540797 RNF111Q6ZNA4 994 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms