RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 PDPRQ8NCN5 879 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 OR52E1Q8NGJ3 308 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 LRRC8CQ8TDW0 803 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 DENND1AQ8TEH3 1009 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 ZFPM2Q8WW38 1151 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 NR4A3Q92570 626 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 DLG3Q92796 817 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 RHBDF1Q96CC6 855 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 FBXL8Q96CD0 374 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 AGAP4Q96P64 663 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 SPOCK3Q9BQ16 436 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 MECRQ9BV79 373 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 ATG10Q9H0Y0 220 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 KIR3DX1Q9H7L2 352 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 PRM3Q9NNZ6 103 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 SLC6A20Q9NP91 592 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 STOX2Q9P2F5 926 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 OPTCQ9UBM4 332 aa11.87□□□□□ -0.51
CLSTN3-208ENST00000538933 FBN1P35555 2871 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 SNRNP200O75643 2136 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 FAM221AA4D161 298 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 KRT87PA6NCN2 255 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 TARM1B6A8C7 271 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 E7EQ34 232 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 G3V2L1 256 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 STX16-NPEPL1H3BU86 382 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 STX16O14662 325 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 ALOX12BO75342 701 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 SUPT7LO94864 414 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 WDR47O94967 919 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 SLC16A8O95907 504 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 HBQ1P09105 142 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 SBK3P0C264 359 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 ST6GAL1P15907 406 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 POLR2CP19387 275 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 AGAP20933 346 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 CCND1P24385 295 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 RAB28P51157 221 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 PNLIPRP1P54315 467 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 WDR4P57081 412 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 NAA20P61599 178 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 Q0VFX4 171 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 PRKAA1Q13131 559 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 NAE1Q13564 534 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 ARHGAP19Q14CB8 494 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 CHI3L2Q15782 390 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 FBXO48Q5FWF7 155 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 ATG16L1Q676U5 607 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 CAPN13Q6MZZ7 669 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 MTFR2Q6P444 385 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 AGTRAPQ6RW13 159 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 SNX31Q8N9S9 440 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 OR4E2Q8NGC2 313 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 ADAMTS18Q8TE60 1221 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 ATP6V1E2Q96A05 226 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 MTFMTQ96DP5 389 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 CNDP1Q96KN2 507 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 IL17FQ96PD4 163 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 TREX2Q9BQ50 279 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 C17orf62Q9BQA9 187 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 PITPNM3Q9BZ71 974 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 ENKD1Q9H0I2 346 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 SRMSQ9H3Y6 488 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 XKR8Q9H6D3 395 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 CCDC177Q9NQR7 707 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 OXSMQ9NWU1 459 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 FBXL4Q9UKA2 621 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 DYRK1BQ9Y463 629 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 ABCA4P78363 2273 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 GTF3C1Q12789 2109 aa11.86□□□□□ -0.51
CLSTN3-208ENST00000538933 GSAPA4D1B5 854 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 HCRTR1O43613 425 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 STK16O75716 305 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 WISP2O76076 250 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 KLHL18O94889 574 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 DHRS4L1P0CG22 281 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 MTHFD2P13995 350 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 IMPDH1P20839 514 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 BGNP21810 368 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 CDH3P22223 829 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 MST1P26927 711 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 IMPA1P29218 277 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 PRDX3P30048 256 aaKnown RBP11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 PKLRP30613 574 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 PIK3CGP48736 1102 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 ART1P52961 327 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 DNAJB13P59910 316 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 HERVK_113P63132 956 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 RBBP7Q16576 425 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 CYP2A13Q16696 494 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 C1orf189Q5VU69 101 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 RHBDD2Q6NTF9 364 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 GFRALQ6UXV0 394 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 LRRC70Q7Z2Q7 622 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 AMIGO1Q86WK6 493 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 TMEM151AQ8N4L1 468 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 C2orf73Q8N5S3 287 aaPredicted RBP11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 TEX9Q8N6V9 391 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 PPFIBP2Q8ND30 876 aa11.85□□□□□ -0.51
CLSTN3-208ENST00000538933 ZNF480Q8WV37 535 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms