RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 OR6B3Q8NGW1 331 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 STAG3L4Q8TBR4 150 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 FAM149B1Q96BN6 582 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 PHF21BQ96EK2 531 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ZFYVE19Q96K21 471 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 DEFB118Q96PH6 123 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 MBOAT4Q96T53 435 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 AIFM2Q9BRQ8 373 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 TMEM246Q9BRR3 403 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 KRTAP4-6Q9BYQ5 205 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 SLC22A4Q9H015 551 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CLPBQ9H078 707 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 GABARAPL1Q9H0R8 117 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CDT1Q9H211 546 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 TFB2MQ9H5Q4 396 aaKnown RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 LDAHQ9H6V9 325 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ACTR8Q9H981 624 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 C12orf10Q9HB07 376 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 C3orf14Q9HBI5 128 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 SMPD4Q9NXE4 827 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 EHD3Q9NZN3 535 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 KIF17Q9P2E2 1029 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 KCNN3Q9UGI6 736 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ENOPH1Q9UHY7 261 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 PHF11Q9UIL8 331 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 NUP50Q9UKX7 468 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 SAMD4AQ9UPU9 718 aaKnown RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 BTRCQ9Y297 605 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 HES2Q9Y543 173 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 PCDHGB6Q9Y5F9 930 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 N6AMT1Q9Y5N5 214 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 GMPPBQ9Y5P6 360 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ZFC3H1O60293 1989 aaKnown RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 A0A087WZ62 844 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ATP6AP2A0A1C7CYW4 349 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ELOVL7A1L3X0 281 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 PABPN1LA6NDY0 278 aaKnown RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 M0QYT0 321 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 PRMT5O14744 637 aaPredicted RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 TEX28O15482 410 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 CACNG3O60359 315 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 USP12O75317 370 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ATP6AP2O75787 350 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 TSPAN9O75954 239 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 CD4P01730 458 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 SERPINF2P08697 491 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ALDOCP09972 364 aaKnown RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 NCF1P14598 390 aaPredicted RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 CD1EP15812 388 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 NCK1P16333 377 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 TPH1P17752 444 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 HDCP19113 662 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 POLR2CP19387 275 aaPredicted RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 DDCP20711 480 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 CD72P21854 359 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ADRA1BP35368 520 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 KRT20P35900 424 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 BMPR1AP36894 532 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ABCG1P45844 678 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 HTR3AP46098 478 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ALDH9A1P49189 494 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 TBX4P57082 545 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 SLC35A2P78381 396 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 IFITM3Q01628 133 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 RUNX1T1Q06455 604 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 HSPA14Q0VDF9 509 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 CSTF3Q12996 717 aaKnown RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 TARDBPQ13148 414 aaKnown RBP eCLIP6.35□□□□□ -1.397e-8■■□□□ 14.2
USP28-202ENST00000535607 SP140Q13342 867 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 CTBP1Q13363 440 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 SEMA3AQ14563 771 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 TAB1Q15750 504 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 UNC50Q53HI1 259 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 COLEC12Q5KU26 742 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 BRMS1LQ5PSV4 323 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 PRAMEF14Q5SWL7 426 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 HECTD2Q5U5R9 776 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 TMEM236Q5W0B7 351 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 CLEC6AQ6EIG7 209 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 MRNIPQ6NTE8 343 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ZNF549Q6P9A3 640 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 SPESP1Q6UW49 350 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 Q6ZVL8 140 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ANKRD33Q7Z3H0 272 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ACOT1Q86TX2 421 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 NOXA1Q86UR1 476 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ZFAND4Q86XD8 727 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 DEFB106AQ8N104 65 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 CRYBG2Q8N1P7 616 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 METTL4Q8N3J2 472 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 FAM109AQ8N4B1 249 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 PRR18Q8N4B5 295 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 STX19Q8N4C7 294 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 IL17RDQ8NFM7 739 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 TOR1AIP2Q8NFQ8 470 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 OR56A4Q8NGH8 313 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 OR9I1Q8NGQ6 314 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 OR2I1PQ8NGU4 316 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 OR6F1Q8NGZ6 308 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 TRAPPC12Q8WVT3 735 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms