RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ACER2Q5QJU3 275 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 NIPAL1Q6NVV3 410 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 C3P1Q6ZMU1 363 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 MBOAT1Q6ZNC8 495 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 MAATS1Q7Z4T9 603 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 ZC3HC1Q86WB0 502 aaKnown RBP9.9□□□□□ -0.82
CPSF1-203ENST00000527916 ZC3H7AQ8IWR0 971 aaKnown RBP9.9□□□□□ -0.82
CPSF1-203ENST00000527916 DMRTC2Q8IXT2 367 aaPredicted RBP9.9□□□□□ -0.82
CPSF1-203ENST00000527916 NKAPQ8N5F7 415 aaKnown RBP9.9□□□□□ -0.82
CPSF1-203ENST00000527916 GPATCH11Q8N954 259 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 MFSD9Q8NBP5 474 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 FBXO36Q8NEA4 188 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 OR9A4Q8NGU2 314 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 METTL21AQ8WXB1 218 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 CFAP36Q96G28 342 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 OLFM1Q99784 485 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 UTP23Q9BRU9 249 aaKnown RBP9.9□□□□□ -0.82
CPSF1-203ENST00000527916 TRIM51Q9BSJ1 452 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 MCMBPQ9BTE3 642 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 GSX1Q9H4S2 264 aaPredicted RBP9.9□□□□□ -0.82
CPSF1-203ENST00000527916 POPDC3Q9HBV1 291 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 KCNJ16Q9NPI9 418 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 CCM2LQ9NUG4 571 aaPredicted RBP9.9□□□□□ -0.82
CPSF1-203ENST00000527916 ZFATQ9P243 1243 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 PYCARDQ9ULZ3 195 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 HCFC1P51610 2035 aa9.9□□□□□ -0.82
CPSF1-203ENST00000527916 COL6A5A8TX70 2615 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 RTTNQ86VV8 2226 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 TRBC2A0A5B9 178 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 FEZF1A0PJY2 475 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 ASPDHA6ND91 283 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 EIF3HO15372 352 aaKnown RBP eCLIP9.89□□□□□ -0.83
CPSF1-203ENST00000527916 SLC35G6P0C7Q6 338 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 CDH1P12830 882 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 ZNF37AP17032 561 aaPredicted RBP9.89□□□□□ -0.83
CPSF1-203ENST00000527916 CHRNB4P30926 498 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 RPL21P46778 160 aaKnown RBP9.89□□□□□ -0.83
CPSF1-203ENST00000527916 CCR8P51685 355 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 CDKL1Q00532 357 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 FOXD4Q12950 439 aaPredicted RBP9.89□□□□□ -0.83
CPSF1-203ENST00000527916 PWP1Q13610 501 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 TUBA3CQ13748 450 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 OR1C1Q15619 314 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 PPP1R3AQ16821 1122 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 SYT16Q17RD7 645 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 TMEM211Q6ICI0 200 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 TUBA3EQ6PEY2 450 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 SBSNQ6UWP8 590 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 ASPGQ86U10 573 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 ANKMY2Q8IV38 441 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 BEST3Q8N1M1 668 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 TBC1D19Q8N5T2 526 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 SPATA4Q8NEY3 305 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 LILRB4Q8NHJ6 448 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 SLC13A3Q8WWT9 602 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 VPS39Q96JC1 886 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 IMMP1LQ96LU5 166 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 FRMD6Q96NE9 622 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 OR4K3Q96R72 315 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 CYTH2Q99418 400 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 KRT12Q99456 494 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 ERP44Q9BS26 406 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 TRIM31Q9BZY9 425 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 CLK4Q9HAZ1 481 aaKnown RBP9.89□□□□□ -0.83
CPSF1-203ENST00000527916 ANKHQ9HCJ1 492 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 NPDC1Q9NQX5 325 aaPredicted RBP9.89□□□□□ -0.83
CPSF1-203ENST00000527916 WHRNQ9P202 907 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 SLC17A6Q9P2U8 582 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 SH2B3Q9UQQ2 575 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 SNX24Q9Y343 169 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 PSAT1Q9Y617 370 aa9.89□□□□□ -0.83
CPSF1-203ENST00000527916 DNAJC13O75165 2243 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 ADAM10O14672 748 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 HOXD4P09016 255 aaPredicted RBP9.88□□□□□ -0.83
CPSF1-203ENST00000527916 GSTA2P09210 222 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 C8orf89P0DMQ9 161 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 ZNF24P17028 368 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 MSX1P28360 303 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 AHRP35869 848 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 AGTR2P50052 363 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 HNMTP50135 292 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 SNRPNP63162 240 aaKnown RBP9.88□□□□□ -0.83
CPSF1-203ENST00000527916 MAT1AQ00266 395 aaKnown RBP9.88□□□□□ -0.83
CPSF1-203ENST00000527916 LTBQ06643 244 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 CALCOCO2Q13137 446 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 CSHL1Q14406 222 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 FASTKD3Q14CZ7 662 aaKnown RBP9.88□□□□□ -0.83
CPSF1-203ENST00000527916 HERC3Q15034 1050 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 MEP1AQ16819 746 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 PLAG1Q6DJT9 500 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 CEP128Q6ZU80 1094 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 PRSS41Q7RTY9 318 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 BIVMQ86UB2 503 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 SIAH3Q8IW03 269 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 KLHDC8AQ8IYD2 350 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 CLYBLQ8N0X4 340 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 AFAP1L2Q8N4X5 818 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 KCT2Q8NC54 265 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 MDS2Q8NDY4 140 aa9.88□□□□□ -0.83
CPSF1-203ENST00000527916 PLPP5Q8NEB5 264 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms