RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	CLK4	Q9HAZ1	481 aa	Known RBP	11.3	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ANKH	Q9HCJ1	492 aa		11.3	□□□□□ -0.6
PDLIM5-208	ENST00000504489	SLC22A11	Q9NSA0	550 aa		11.3	□□□□□ -0.6
PDLIM5-208	ENST00000504489	KCND3	Q9UK17	655 aa		11.3	□□□□□ -0.6
PDLIM5-208	ENST00000504489	CROT	Q9UKG9	612 aa		11.3	□□□□□ -0.6
PDLIM5-208	ENST00000504489	PCDHGA6	Q9Y5G7	932 aa		11.3	□□□□□ -0.6
PDLIM5-208	ENST00000504489		A0A0A6YYC8	382 aa	Predicted RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489		I3L1I5	382 aa	Predicted RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	FFAR3	O14843	346 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	GPR42	O15529	346 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ATP8B1	O43520	1251 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ZNF888	P0CJ79	500 aa	Predicted RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	LIF	P15018	202 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	PTX3	P26022	381 aa	Predicted RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	HNRNPH1	P31943	449 aa	Known RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	DLST	P36957	453 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ARFIP1	P53367	373 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	WDR4	P57081	412 aa	Known RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	RPS15	P62841	145 aa	Known RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	SNRPN	P63162	240 aa	Known RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ZNF33B	Q06732	778 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	TGM3	Q08188	693 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	IFT88	Q13099	833 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	DNASE1L3	Q13609	305 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	COL9A2	Q14055	689 aa	Predicted RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	RCN2	Q14257	317 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	NCF4	Q15080	339 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	TMEM35A	Q53FP2	167 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	DEPDC1	Q5TB30	811 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	HHAT	Q5VTY9	493 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	TTC19	Q6DKK2	380 aa	Predicted RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	CHSY3	Q70JA7	882 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	COX15	Q7KZN9	410 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	PRSS41	Q7RTY9	318 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	VASH2	Q86V25	355 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	HOMEZ	Q8IX15	550 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	CDYL2	Q8N8U2	506 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	AMER3	Q8N944	861 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ANKRD42	Q8N9B4	389 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	SRFBP1	Q8NEF9	429 aa	Known RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	OR2L5	Q8NG80	312 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	OR9A4	Q8NGU2	314 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ZCCHC10	Q8TBK6	192 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	METTL6	Q8TCB7	284 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	COL26A1	Q96A83	441 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	MMAB	Q96EY8	250 aa	Predicted RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	CNTNAP3B	Q96NU0	1288 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	MTERF1	Q99551	399 aa	Known RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	CNTNAP3	Q9BZ76	1288 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	REXO4	Q9GZR2	422 aa	Known RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	SLC26A1	Q9H2B4	701 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	MID1IP1	Q9NPA3	183 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	DMRT3	Q9NQL9	472 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	NKIRAS1	Q9NYS0	192 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	IFT80	Q9P2H3	777 aa	Predicted RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	GPN3	Q9UHW5	284 aa	Predicted RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ZMIZ1	Q9ULJ6	1067 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	SNX6	Q9UNH7	406 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	FARSA	Q9Y285	508 aa	Known RBP	11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	MAU2	Q9Y6X3	613 aa		11.29	□□□□□ -0.6
PDLIM5-208	ENST00000504489	IGLV3-12	A0A075B6K2	115 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	MAGEB17	A8MXT2	336 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	MANBA	O00462	879 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ERI3	O43414	337 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	GALR3	O60755	368 aa	Predicted RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	KLHL18	O94889	574 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	RECK	O95980	971 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	TGFB1	P01137	390 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	KRT6A	P02538	564 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	KRT6B	P04259	564 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	FGF4	P08620	206 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	IL1RN	P18510	177 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	FBL	P22087	321 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	F8A1	P23610	371 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	PTPN4	P29074	926 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	HMOX2	P30519	316 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	CCR10	P46092	362 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	KRT6C	P48668	564 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	NEK2	P51955	445 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	RPS13	P62277	151 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	TLE3	Q04726	772 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	CUL3	Q13618	768 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	DDX39B	Q13838	428 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ARL13A	Q5H913	290 aa	Predicted RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ARHGAP40	Q5TG30	622 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	BROX	Q5VW32	411 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	MLIP	Q5VWP3	458 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	KHDRBS2	Q5VWX1	349 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	MRPL14	Q6P1L8	145 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	TRIM40	Q6P9F5	258 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ABHD17C	Q6PCB6	329 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ZCCHC23	Q6ZST2	131 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	PDSS2	Q86YH6	399 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	RNF175	Q8N4F7	328 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	METTL27	Q8N6F8	245 aa	Predicted RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	MTFMT	Q96DP5	389 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	SLC45A3	Q96JT2	553 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	QRFPR	Q96P65	431 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	F2RL3	Q96RI0	385 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms