RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 NSFP46459 744 aaKnown RBP3.78□□□□□ -1.8
USP54-217ENST00000498213 DNA2P51530 1060 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 SLC12A2P55011 1212 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 RHOAP61586 193 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 CDR2Q01850 454 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 BCL2L1Q07817 233 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 LRMPQ12912 555 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 DNASE1L3Q13609 305 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 ACOX1Q15067 660 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 IRF4Q15306 451 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 ASIC2Q16515 512 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 KYNUQ16719 465 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 KLHL40Q2TBA0 621 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 PTPN20Q4JDL3 420 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 KLHDC7AQ5VTJ3 777 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 NKAIN2Q5VXU1 208 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 ZDHHC20Q5W0Z9 365 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 SPECC1LQ69YQ0 1117 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 PLEKHA7Q6IQ23 1121 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 MRNIPQ6NTE8 343 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 PNCKQ6P2M8 343 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 KLHL35Q6PF15 583 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 WASH2PQ6VEQ5 465 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 DEF8Q6ZN54 512 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 FAM183BPQ6ZVS7 135 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 ARHGAP22Q7Z5H3 698 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 IRF2BP2Q7Z5L9 587 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 TAF8Q7Z7C8 310 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 SLFN11Q7Z7L1 901 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 SLC9B2Q86UD5 537 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 VPS36Q86VN1 386 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 CIARTQ8N365 385 aaPredicted RBP3.78□□□□□ -1.8
USP54-217ENST00000498213 SFRP1Q8N474 314 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 RYBPQ8N488 228 aaPredicted RBP3.78□□□□□ -1.8
USP54-217ENST00000498213 ANKRD20A12PQ8NF67 263 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 OR52K2Q8NGK3 314 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 SUN3Q8TAQ9 357 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 GRHL3Q8TE85 626 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 SCRN2Q96FV2 425 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 LRFN5Q96NI6 719 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 FCRL5Q96RD9 977 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 MCCC1Q96RQ3 725 aaPredicted RBP3.78□□□□□ -1.8
USP54-217ENST00000498213 LYSMD1Q96S90 227 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 RUFY1Q96T51 708 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 TBCBQ99426 244 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 CD180Q99467 661 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 BARD1Q99728 777 aaKnown RBP3.78□□□□□ -1.8
USP54-217ENST00000498213 CNPY3Q9BT09 278 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 DPEP2Q9H4A9 486 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 ZDHHC6Q9H6R6 413 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 SAP30LQ9HAJ7 183 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 WASH6PQ9NQA3 447 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 SAMSN1Q9NSI8 373 aaKnown RBP3.78□□□□□ -1.8
USP54-217ENST00000498213 TMEM45AQ9NWC5 275 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 TMEM9Q9P0T7 183 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 C5AR2Q9P296 337 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 NFKBIL1Q9UBC1 381 aaPredicted RBP3.78□□□□□ -1.8
USP54-217ENST00000498213 HEY2Q9UBP5 337 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 UBA2Q9UBT2 640 aaPredicted RBP3.78□□□□□ -1.8
USP54-217ENST00000498213 EPHA6Q9UF33 1036 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 BTRCQ9Y297 605 aa3.78□□□□□ -1.8
USP54-217ENST00000498213 ANK3Q12955 4377 aaKnown RBP3.78□□□□□ -1.8
USP54-217ENST00000498213 KMT2CQ8NEZ4 4911 aaKnown RBP3.77□□□□□ -1.81
USP54-217ENST00000498213 WNK1Q9H4A3 2382 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 IGHV1OR21-1A0A087WYE8 117 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 FAM90A10PA6NDY2 464 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 TLCD2A6NGC4 264 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 SERINC4A6NH21 518 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 CLCA1A8K7I4 914 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 K7ERQ8 282 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 TRAFD1O14545 582 aaPredicted RBP3.77□□□□□ -1.81
USP54-217ENST00000498213 CRLF1O75462 422 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 ZNF189O75820 626 aaPredicted RBP3.77□□□□□ -1.81
USP54-217ENST00000498213 RECQL5O94762 991 aaPredicted RBP3.77□□□□□ -1.81
USP54-217ENST00000498213 SYF2O95926 243 aaKnown RBP3.77□□□□□ -1.81
USP54-217ENST00000498213 MYBL1P10243 752 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 UCHL3P15374 230 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 HOXB6P17509 224 aaKnown RBP3.77□□□□□ -1.81
USP54-217ENST00000498213 MATN1P21941 496 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 DNASE1P24855 282 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 CD1CP29017 333 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 SERPINB6P35237 376 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 PCK1P35558 622 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 PPM1FP49593 454 aaPredicted RBP3.77□□□□□ -1.81
USP54-217ENST00000498213 CDH6P55285 790 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 DCDC1P59894 354 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 RPS18P62269 152 aaKnown RBP3.77□□□□□ -1.81
USP54-217ENST00000498213 IL10RBQ08334 325 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 PNOCQ13519 176 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 GALEQ14376 348 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 ZNF235Q14590 738 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 SYCP1Q15431 976 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 TWIST1Q15672 202 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 OTUD1Q5VV17 481 aaPredicted RBP3.77□□□□□ -1.81
USP54-217ENST00000498213 FAAH2Q6GMR7 532 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 ABLIM2Q6H8Q1 611 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 RWDD4Q6NW29 188 aaKnown RBP3.77□□□□□ -1.81
USP54-217ENST00000498213 XKRXQ6PP77 449 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 ENPP7Q6UWV6 458 aa3.77□□□□□ -1.81
USP54-217ENST00000498213 COLCA1Q6ZS62 124 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms