RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 APOC3P02656 99 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 KLHL15Q96M94 604 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 FUNDC2Q9BWH2 189 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 TM6SF2Q9BZW4 377 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 MRPS30Q9NP92 439 aaKnown RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 PAQR5Q9NXK6 330 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 EIF2B4Q9UI10 523 aaKnown RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 NUBP2Q9Y5Y2 271 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 NFATC1O95644 943 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 PRKCHP24723 683 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 FRKP42685 505 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CREB5Q02930 508 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 ARSHQ5FYA8 562 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 GSG1LQ6UXU4 331 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 SERPINA9Q86WD7 417 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 JAGN1Q8N5M9 183 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CAMKVQ8NCB2 501 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 OR13J1Q8NGT2 312 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 SPIN2AQ99865 258 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 SPIN2BQ9BPZ2 258 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 NTPCRQ9BSD7 190 aaKnown RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 EVA1AQ9H8M9 152 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 GFOD1Q9NXC2 390 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 KIF26BQ2KJY2 2108 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 AGRPO00253 132 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 RFPL3O75679 317 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 ITGA5P08648 1049 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 UNGP13051 313 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 ENGP17813 658 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 GK2Q14410 553 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 MBLAC2Q68D91 279 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 METTL2BQ6P1Q9 378 aaKnown RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 IRF2BP1Q8IU81 584 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 GPR151Q8TDV0 419 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 PGLYRP2Q96PD5 576 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 SLC5A7Q9GZV3 580 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 OSBPL2Q9H1P3 480 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 TIMM22Q9Y584 194 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 A0A0J9YVX5 310 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 SLC22A31A6NKX4 558 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CDK14O94921 469 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 PIM1P11309 404 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CNOT9Q92600 299 aaKnown RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 ADAD1Q96M93 576 aaKnown RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 GLTPQ9NZD2 209 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 COL5A2P05997 1499 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 C13orf42A0A1B0GVH6 325 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 RAD51DO75771 328 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 PRKACAP17612 351 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 HRH2P25021 359 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CCND3P30281 292 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 ENTPD1P49961 510 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CDK6Q00534 326 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 PRAMEF13Q5VWM6 474 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 ADAM2Q99965 735 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 FAM230AA0A1W2PPH8 454 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 OR1F1O43749 312 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CXCR1P25024 350 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 VSX2P58304 361 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 SMAD3P84022 425 aaKnown RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CNTN2Q02246 1040 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 MLLT1Q03111 559 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 ALG1LQ6GMV1 187 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 COMTD1Q86VU5 262 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 SLC35B2Q8TB61 432 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 DHRS1Q96LJ7 313 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 TBL1XR1Q9BZK7 514 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CNTNAP1P78357 1384 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 WDR4P57081 412 aaKnown RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 AARDQ4LEZ3 155 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CEACAM20Q6UY09 585 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 S100A7AQ86SG5 101 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 HS6ST2Q96MM7 605 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CCM2Q9BSQ5 444 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 SLX4Q8IY92 1834 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 RALGAPA1Q6GYQ0 2036 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 C12orf71A8MTZ7 269 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 UPK1BO75841 260 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 NMBRP28336 390 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 CYBRD1Q53TN4 286 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 C6orf141Q5SZD1 244 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 AMZ2Q86W34 360 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 C12orf29Q8N999 325 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 RNF128Q8TEB7 428 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 SETD7Q8WTS6 366 aaKnown RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 MFSD3Q96ES6 412 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 PGAP3Q96FM1 320 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-209ENST00000472056 DOHHQ9BU89 302 aa12.89□□□□□ -0.35
COL6A3-209ENST00000472056 MEGF11A6BM72 1044 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 FAM155BO75949 473 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 ETV1P50549 477 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 HNRNPA0Q13151 305 aaKnown RBP12.88□□□□□ -0.35
COL6A3-209ENST00000472056 CRHR2Q13324 411 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 SNTB2Q13425 540 aaKnown RBP12.88□□□□□ -0.35
COL6A3-209ENST00000472056 ORAI3Q9BRQ5 295 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 SAGE1Q9NXZ1 904 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 PCDHGA8Q9Y5G5 932 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 TNS2Q63HR2 1409 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 TMEM150CB9EJG8 249 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms