RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 NDUFAF4Q9P032 175 aa8.58□□□□□ -1.04
SYNE1-217ENST00000466159 SPASTQ9UBP0 616 aa8.58□□□□□ -1.04
SYNE1-217ENST00000466159 MAPRE3Q9UPY8 281 aa8.58□□□□□ -1.04
SYNE1-217ENST00000466159 PCDHGB1Q9Y5G3 927 aa8.58□□□□□ -1.04
SYNE1-217ENST00000466159 GMEB1Q9Y692 573 aa8.58□□□□□ -1.04
SYNE1-217ENST00000466159 HEPACAM2A8MVW5 462 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 J3QRK9 145 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 TNFRSF21O75509 655 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 MASP1P48740 699 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 ELP6Q0PNE2 266 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 TEAD4Q15561 434 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 HIST2H2ACQ16777 129 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-217ENST00000466159 HIST2H2AA3Q6FI13 130 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 FAM71E1Q6IPT2 247 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 C11orf96Q7Z7L8 435 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 ANKRD13BQ86YJ7 626 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 MMAAQ8IVH4 418 aaKnown RBP8.57□□□□□ -1.04
SYNE1-217ENST00000466159 SLC15A4Q8N697 577 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 TMIEQ8NEW7 156 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 OR5AR1Q8NGP9 310 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 OR52J3Q8NH60 311 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 GOT1L1Q8NHS2 421 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-217ENST00000466159 NFKBIDQ8NI38 313 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 BORCS5Q969J3 196 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 CXorf40BQ96DE9 158 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 KCNC2Q96PR1 638 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 CCDC177Q9NQR7 707 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-217ENST00000466159 ITM2CQ9NQX7 267 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 RHBDL2Q9NX52 303 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 SCN3BQ9NY72 215 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 ASF1AQ9Y294 204 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 PADI2Q9Y2J8 665 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 TPRKBQ9Y3C4 175 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 MAP4K5Q9Y4K4 846 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 PCDHGB3Q9Y5G1 929 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 CORINQ9Y5Q5 1042 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 HSPE1-MOB4S4R3N1 261 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 CCDC88CQ9P219 2028 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 DOCK9Q9BZ29 2069 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 EDDM13A0A1B0GTR0 161 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 PRAMEF25A6NGN4 478 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 PCDHGA12O60330 932 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 GPR37L1O60883 481 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 FAM20BO75063 409 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 WBP4O75554 376 aaKnown RBP8.57□□□□□ -1.04
SYNE1-217ENST00000466159 CLPXO76031 633 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 MT-ND2P03891 347 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 KRT20P35900 424 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 C21orf59P57076 290 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 CXCR4P61073 352 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 PDE7AQ13946 482 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 SCARB2Q14108 478 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 DGCR6Q14129 220 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 ZNF234Q14588 700 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 NUMA1Q14980 2115 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 SLC5A12Q1EHB4 618 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 GAB4Q2WGN9 574 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 GPR153Q6NV75 609 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 TMC5Q6UXY8 1006 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 VN1R5Q7Z5H4 357 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 RNF130Q86XS8 419 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.57□□□□□ -1.04
SYNE1-217ENST00000466159 METTL4Q8N3J2 472 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 OR2L2Q8NH16 312 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 RORBQ92753 470 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 TAMM41Q96BW9 452 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 PLEKHA8Q96JA3 519 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 LINC00615Q96LM1 132 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-217ENST00000466159 FEVQ99581 238 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 EPYCQ99645 322 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 EHD1Q9H4M9 534 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 C1GALT1Q9NS00 363 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 ATAD3AQ9NVI7 634 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 DEC1Q9P2X7 70 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 TDRKHQ9Y2W6 561 aaKnown RBP8.57□□□□□ -1.04
SYNE1-217ENST00000466159 LYVE1Q9Y5Y7 322 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 CFAP20Q9Y6A4 193 aaKnown RBP8.57□□□□□ -1.04
SYNE1-217ENST00000466159 REV3LO60673 3130 aa8.57□□□□□ -1.04
SYNE1-217ENST00000466159 C17orf113A0A1B0GUU1 675 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 LINC01553A4QN01 128 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 TNFRSF11BO00300 401 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 FADS2O95864 444 aaKnown RBP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 VIPP01282 170 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 IL3P08700 152 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 MYOGP15173 224 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 FUT4P22083 530 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 ACVR2AP27037 513 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 PRIM2P49643 509 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 LSM3P62310 102 aaKnown RBP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 DPTQ07507 201 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 FOXD4Q12950 439 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 ELAVL3Q14576 367 aaKnown RBP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 TMEM240Q5SV17 173 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 PRAMEF14Q5SWL7 426 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 GCNT6Q5T4J0 391 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 PRAMEF13Q5VWM6 474 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 TMIGD1Q6UXZ0 262 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 ZNF765Q7L2R6 523 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 ENTHD1Q8IYW4 607 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 ABHD11Q8NFV4 315 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms