RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TOP1MTQ969P6 601 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SPTSSAQ969W0 71 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 AMDHD1Q96NU7 426 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 YIPF4Q9BSR8 244 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 FAM86C1Q9NVL1 165 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 GSKIPQ9P0R6 139 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 COMMD3Q9UBI1 195 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 DNAJB9Q9UBS3 223 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 PCDHB10Q9UN67 800 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 R3HDM2Q9Y2K5 976 aaKnown RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 GRID2O43424 1007 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 FGF18O76093 207 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 DLDP09622 509 aaKnown RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 DDR1Q08345 913 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 GANABQ14697 944 aaKnown RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 DUOXA1Q1HG43 343 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SPATS1Q496A3 300 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 RNF111Q6ZNA4 994 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 PLEKHG7Q6ZR37 379 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 GRASPQ7Z6J2 395 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 DEFB119Q8N690 84 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 RAB2BQ8WUD1 216 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 CREB3L1Q96BA8 519 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SUSD3Q96L08 255 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 CIB1Q99828 191 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ACTR6Q9GZN1 396 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 KCNK13Q9HB14 408 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 PCDHAC2Q9Y5I4 1007 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 D6RAR5 112 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 DNM1LO00429 736 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 GABBR2O75899 941 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 IL1AP01583 271 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 HOXA9P31269 272 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 GPR143P51810 404 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 OR4D2P58180 307 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 DCDC1P59894 354 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 POU6F2P78424 691 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 DEFA5Q01523 94 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 KLF10Q13118 480 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 GRM2Q14416 872 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 CLCA4Q14CN2 919 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 LDB1Q86U70 411 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 GALNT11Q8NCW6 608 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TFGQ92734 400 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ARMC5Q96C12 935 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 RHBDF1Q96CC6 855 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 RETREG1Q9H6L5 497 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 MEPEQ9NQ76 525 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SDHAF2Q9NX18 166 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ABCG2Q9UNQ0 655 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 CNTN6Q9UQ52 1028 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SH2B3Q9UQQ2 575 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 CLIC1O00299 241 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SCAMP1O15126 338 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ADAMTS4O75173 837 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 INMTO95050 263 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 C4BPAP04003 597 aaKnown RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 BCHEP06276 602 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SMPD1P17405 629 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TYRP1P17643 537 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 NMBRP28336 390 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 MLLT6P55198 1093 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SGCAQ16586 387 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 FSTL4Q6MZW2 842 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 AADACL2Q6P093 401 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 LRRN1Q6UXK5 716 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SMIM15Q7Z3B0 74 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 THOC6Q86W42 341 aaKnown RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 CILP2Q8IUL8 1156 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 OR10G2Q8NGC3 310 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TTYH2Q9BSA4 534 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 MROQ9BYG7 248 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 HRASLS2Q9NWW9 162 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TAC3Q9UHF0 121 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 MAFBQ9Y5Q3 323 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 HSBP1L1C9JCN9 74 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 SLC22A1O15245 554 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TSPAN6O43657 245 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 BANF1O75531 89 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ERP29P30040 261 aaKnown RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 FSTL1Q12841 308 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ARL13AQ5H913 290 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-204ENST00000423058 LRRC73Q5JTD7 316 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TMIGD1Q6UXZ0 262 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TRAM1L1Q8N609 369 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF610Q8N9Z0 462 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 OR2AP1Q8NGE2 309 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 HAS1Q92839 578 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 OR5B12Q96R08 314 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TMED9Q9BVK6 235 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 ETAA1Q9NY74 926 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TAS2R10Q9NYW0 307 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 CARD8Q9Y2G2 431 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 TMEM14AQ9Y6G1 99 aa6.64□□□□□ -1.35
SCN1A-204ENST00000423058 NRP1O14786 923 aa6.63□□□□□ -1.35
SCN1A-204ENST00000423058 HCRTR2O43614 444 aa6.63□□□□□ -1.35
SCN1A-204ENST00000423058 IFNA10P01566 189 aa6.63□□□□□ -1.35
SCN1A-204ENST00000423058 RPS15AP62244 130 aaKnown RBP6.63□□□□□ -1.35
SCN1A-204ENST00000423058 POU4F2Q12837 409 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms