RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 AKAP10O43572 662 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 KIF1CO43896 1103 aaKnown RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 TMPRSS11DO60235 418 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 SH3BP5O60239 455 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 SCELO95171 688 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 C9P02748 559 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 IL3P08700 152 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 COX7A2P14406 83 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 PNLIPP16233 465 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 ALDH4A1P30038 563 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 PGM1P36871 562 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 MLLT3P42568 568 aaPredicted RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 KIR3DL1P43629 444 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 GSTM5P46439 218 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 PPM1FP49593 454 aaPredicted RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 MAPK12P53778 367 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 PLA2G16P53816 162 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 TAS2R50P59544 299 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 ARF3P61204 181 aaPredicted RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 KLC1Q07866 573 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 FOXM1Q08050 763 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 RGS1Q08116 209 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 ART3Q13508 389 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 PDE7AQ13946 482 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 NFYCQ13952 458 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 DEFB110Q30KQ9 67 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 TRMT5Q32P41 509 aaKnown RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 PROX2Q3B8N5 592 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 PAGE3Q5JUK9 113 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 PLA2G2CQ5R387 149 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 CCNYL2Q5T2Q4 361 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 LAIR1Q6GTX8 287 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 OR4C11Q6IEV9 310 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 FAM71E1Q6IPT2 247 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 GUSBP11Q6P575 273 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 TRIM40Q6P9F5 258 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 ABHD17CQ6PCB6 329 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 SLC2A7Q6PXP3 512 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 ZNF793Q6ZN11 406 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 BNC2Q6ZN30 1099 aaPredicted RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 MSANTD1Q6ZTZ1 278 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 DHDDSQ86SQ9 333 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 ULK2Q8IYT8 1036 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 OR4N4Q8N0Y3 316 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 CARFQ8N187 725 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 ARHGAP24Q8N264 748 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 TMEM132CQ8N3T6 1108 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 ZCCHC7Q8N3Z6 543 aaKnown RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 MINDY1Q8N5J2 469 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 DPP10Q8N608 796 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 EID2Q8N6I1 236 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 Q8N9G6 341 aaPredicted RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 KCT2Q8NC54 265 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 CAMKVQ8NCB2 501 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 OR6C4Q8NGE1 309 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 C16orf78Q8WTQ4 265 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 NCSTNQ92542 709 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 GAL3ST3Q96A11 431 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 RERGQ96A58 199 aaPredicted RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 ZDHHC12Q96GR4 267 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 TCTN2Q96GX1 697 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 AHCYL2Q96HN2 611 aaKnown RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 TGM7Q96PF1 710 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 KCNC2Q96PR1 638 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 GPATCH1Q9BRR8 931 aaKnown RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 SLC39A3Q9BRY0 314 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 THTPAQ9BU02 230 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 ZMYND15Q9H091 742 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 DDX31Q9H8H2 851 aaKnown RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 FAM60AQ9NP50 221 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 SPAG4Q9NPE6 437 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 MAP10Q9P2G4 905 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 RAB23Q9ULC3 237 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 PRPF19Q9UMS4 504 aaKnown RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 MAPRE3Q9UPY8 281 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 EXO1Q9UQ84 846 aaKnown RBP6.33□□□□□ -1.4
VPS41-204ENST00000413141 NEUROG3Q9Y4Z2 214 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 PCDHGA7Q9Y5G6 932 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 ZNF318Q5VUA4 2279 aa6.33□□□□□ -1.4
VPS41-204ENST00000413141 A0A088AWK7 358 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 IGHV5-51A0A0C4DH38 117 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 A0A0G2JN53 185 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 EME2A4GXA9 379 aaPredicted RBP6.32□□□□□ -1.4
VPS41-204ENST00000413141 URADA6NGE7 173 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 CASC3O15234 703 aaKnown RBP6.32□□□□□ -1.4
VPS41-204ENST00000413141 ZSCAN9O15535 394 aaPredicted RBP6.32□□□□□ -1.4
VPS41-204ENST00000413141 B4GAT1O43505 415 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 HCRTR1O43613 425 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 SCN2BO60939 215 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 RASSF9O75901 435 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 PDE5AO76074 875 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 B3GALT4O96024 378 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 FURINP09958 794 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 ZNF883P0CG24 379 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 ZNF888P0CJ79 500 aaPredicted RBP6.32□□□□□ -1.4
VPS41-204ENST00000413141 PIM1P11309 404 aaPredicted RBP6.32□□□□□ -1.4
VPS41-204ENST00000413141 CKMT1AP12532 417 aa6.32□□□□□ -1.4
VPS41-204ENST00000413141 HOXB9P17482 250 aaPredicted RBP6.32□□□□□ -1.4
VPS41-204ENST00000413141 HIST1H1TP22492 207 aaPredicted RBP6.32□□□□□ -1.4
VPS41-204ENST00000413141 ATP5A1P25705 553 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms