RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 CAPRIN1Q14444 709 aaKnown RBP25.55■■□□□ 1.68
MSX1-201ENST00000382723 TRIM40Q6P9F5 258 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 SCUBE1Q8IWY4 988 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 ULK2Q8IYT8 1036 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 NT5CQ8TCD5 201 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 TM4SF19Q96DZ7 209 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 THAP11Q96EK4 314 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 ZDHHC12Q96GR4 267 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 LOXL4Q96JB6 756 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 CDRT15Q96T59 188 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 SLAMF8Q9P0V8 285 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 PACSIN3Q9UKS6 424 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 PCDHGA7Q9Y5G6 932 aa25.55■■□□□ 1.68
MSX1-201ENST00000382723 SCAMP2O15127 329 aaKnown RBP25.54■■□□□ 1.68
MSX1-201ENST00000382723 B3GALT4O96024 378 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 PHC1P78364 1004 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 MC1RQ01726 317 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 C2orf80Q0P641 193 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 DEFB110Q30KQ9 67 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 ABHD17CQ6PCB6 329 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 HACD2Q6Y1H2 254 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 USP53Q70EK8 1073 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 PUM2Q8TB72 1066 aaKnown RBP eCLIP25.54■■□□□ 1.681e-6■■■■■ 43.1
MSX1-201ENST00000382723 KCNC2Q96PR1 638 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 MYNNQ9NPC7 610 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 GID8Q9NWU2 228 aa25.54■■□□□ 1.68
MSX1-201ENST00000382723 CASC3O15234 703 aaKnown RBP25.53■■□□□ 1.68
MSX1-201ENST00000382723 HCRTR1O43613 425 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 DUX1O43812 170 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 PDE5AO76074 875 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 IL3P08700 152 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 MAPKAPK3Q16644 382 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 OR4F3Q6IEY1 312 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 GUSBP11Q6P575 273 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 ZNF793Q6ZN11 406 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 BNC2Q6ZN30 1099 aaPredicted RBP25.53■■□□□ 1.68
MSX1-201ENST00000382723 OR8K5Q8NH50 307 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 MMADHCQ9H3L0 296 aaPredicted RBP25.53■■□□□ 1.68
MSX1-201ENST00000382723 DDX31Q9H8H2 851 aaKnown RBP25.53■■□□□ 1.68
MSX1-201ENST00000382723 EPHA6Q9UF33 1036 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 EXO1Q9UQ84 846 aaKnown RBP25.53■■□□□ 1.68
MSX1-201ENST00000382723 MYO15AQ9UKN7 3530 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 LY6G6EA0A0G2JKS1 128 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 GABRR3A8MPY1 467 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 KHNYNO15037 678 aaKnown RBP25.53■■□□□ 1.68
MSX1-201ENST00000382723 RASSF9O75901 435 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 KIR3DL1P43629 444 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 VSX2P58304 361 aaPredicted RBP25.53■■□□□ 1.68
MSX1-201ENST00000382723 C21orf58P58505 322 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 C6orf10Q5SRN2 563 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 MMP21Q8N119 569 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 MINDY1Q8N5J2 469 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 CAMKVQ8NCB2 501 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 ZCCHC10Q8TBK6 192 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 STARD8Q92502 1023 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 LRRC58Q96CX6 371 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 CCDC3Q9BQI4 270 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 RAB33BQ9H082 229 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 ADA2Q9NZK5 511 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 ADAM29Q9UKF5 820 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 BTBD3Q9Y2F9 522 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 U3KQA8 63 aa25.53■■□□□ 1.68
MSX1-201ENST00000382723 CABIN1Q9Y6J0 2220 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 TLCD2A6NGC4 264 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 TMPRSS11DO60235 418 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 ZNF888P0CJ79 500 aaPredicted RBP25.52■■□□□ 1.68
MSX1-201ENST00000382723 ATXN3P54252 364 aaPredicted RBP25.52■■□□□ 1.68
MSX1-201ENST00000382723 GPLD1P80108 840 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 SRSF11Q05519 484 aaKnown RBP25.52■■□□□ 1.68
MSX1-201ENST00000382723 NR1D2Q14995 579 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 FAM71E1Q6IPT2 247 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 GPR180Q86V85 440 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 ANKRD46Q86W74 232 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 FAM13CQ8NE31 585 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 EPB41L1Q9H4G0 881 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 REEP4Q9H6H4 257 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 PRDM7Q9NQW5 492 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 SOHLH2Q9NX45 425 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 SH3BP4Q9P0V3 963 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 PCDHGA5Q9Y5G8 931 aa25.52■■□□□ 1.68
MSX1-201ENST00000382723 PCDH15Q96QU1 1955 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 IGHV5-51A0A0C4DH38 117 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 A8MUI8 341 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 SORBS2O94875 1100 aaKnown RBP25.51■■□□□ 1.67
MSX1-201ENST00000382723 LAMP1P11279 417 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 PIM1P11309 404 aaPredicted RBP25.51■■□□□ 1.67
MSX1-201ENST00000382723 CD1CP29017 333 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 CFHR1Q03591 330 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 DPY19L1Q2PZI1 675 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 TRMT5Q32P41 509 aaKnown RBP25.51■■□□□ 1.67
MSX1-201ENST00000382723 CPTPQ5TA50 214 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 SPRED1Q7Z699 444 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 DHDDSQ86SQ9 333 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 DPP10Q8N608 796 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 SRFBP1Q8NEF9 429 aaKnown RBP25.51■■□□□ 1.67
MSX1-201ENST00000382723 TCTN2Q96GX1 697 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 TBCDQ9BTW9 1192 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 STARD5Q9NSY2 213 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 A0A0A6YYD5 115 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 PRR33A8MZF0 331 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms