RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 TRIQKQ629K1 86 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 ZNF57Q68EA5 555 aaPredicted RBP13.34□□□□□ -0.27
SDC1-202ENST00000381150 OTOP2Q7RTS6 562 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 BOCQ9BWV1 1114 aa13.34□□□□□ -0.27
SDC1-202ENST00000381150 KPNA5O15131 536 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 INSIG1O15503 277 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 ACPPP15309 386 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 MAD2L1Q13257 205 aaPredicted RBP13.33□□□□□ -0.27
SDC1-202ENST00000381150 TATDN3Q17R31 274 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 VMACQ2NL98 169 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 TIMM50Q3ZCQ8 353 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 CTSL3PQ5NE16 218 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 ATG9BQ674R7 924 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 LGI4Q8N135 537 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 ASB15Q8WXK1 588 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 OVCA2Q8WZ82 227 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 PDLIM5Q96HC4 596 aaKnown RBP13.33□□□□□ -0.27
SDC1-202ENST00000381150 CPPED1Q9BRF8 314 aaPredicted RBP13.33□□□□□ -0.27
SDC1-202ENST00000381150 MAGIXQ9H6Y5 334 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 CWH43Q9H720 699 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 HMX1Q9NP08 348 aaPredicted RBP13.33□□□□□ -0.27
SDC1-202ENST00000381150 ZC4H2Q9NQZ6 224 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 ZNF224Q9NZL3 707 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 UBA2Q9UBT2 640 aaPredicted RBP13.33□□□□□ -0.27
SDC1-202ENST00000381150 CLEC2DQ9UHP7 191 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 LRFN2Q9ULH4 789 aa13.33□□□□□ -0.27
SDC1-202ENST00000381150 TNPO3Q9Y5L0 923 aaKnown RBP13.33□□□□□ -0.27
SDC1-202ENST00000381150 FAM220BPB1ANY3 271 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 FAM227AF5H4B4 570 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 J3KTA2 159 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 LRRTM2O43300 516 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 CYP2A6P11509 494 aaPredicted RBP13.33□□□□□ -0.28
SDC1-202ENST00000381150 OR1D2P34982 312 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 ZNF284Q2VY69 593 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 TCF25Q9BQ70 676 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 A0A1W2PQL4 384 aaPredicted RBP13.33□□□□□ -0.28
SDC1-202ENST00000381150 SH3BP5O60239 455 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 ZNF780AO75290 641 aaPredicted RBP13.33□□□□□ -0.28
SDC1-202ENST00000381150 CLDN11O75508 207 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 SLC25A14O95258 325 aaPredicted RBP13.33□□□□□ -0.28
SDC1-202ENST00000381150 TSPAN12O95859 305 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 CD72P21854 359 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 ITPKAP23677 461 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 PSMA1P25786 263 aaKnown RBP13.33□□□□□ -0.28
SDC1-202ENST00000381150 SLC11A2P49281 568 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 TTPAP49638 278 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 OLR1P78380 273 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 FAPQ12884 760 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 EFR3AQ14156 821 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 ARMC12Q5T9G4 340 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 CCDC190Q86UF4 302 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 ZZZ3Q8IYH5 903 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 PIH1D2Q8WWB5 315 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 POLR2J2Q9GZM3 115 aaKnown RBP13.33□□□□□ -0.28
SDC1-202ENST00000381150 MCUBQ9NWR8 336 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 ARL15Q9NXU5 204 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 RABL2AQ9UBK7 228 aaPredicted RBP13.33□□□□□ -0.28
SDC1-202ENST00000381150 GRIP1Q9Y3R0 1128 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 UNC80Q8N2C7 3258 aa13.33□□□□□ -0.28
SDC1-202ENST00000381150 SLC28A1O00337 649 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 PITPNM1O00562 1244 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 PDYNP01213 254 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 CYP17A1P05093 508 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 LPOP22079 712 aaPredicted RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 RORCP51449 518 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 ATN1P54259 1190 aaPredicted RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 COL9A2Q14055 689 aaPredicted RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 TAF1AQ15573 450 aaPredicted RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 FLYWCH1Q4VC44 716 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 HECTD3Q5T447 861 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 TYW3Q6IPR3 259 aaKnown RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 CXorf57Q6NSI4 855 aaKnown RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 C1GALT1C1Q96EU7 318 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 MRPL9Q9BYD2 267 aaKnown RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 FAM83DQ9H4H8 585 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 ELOVL2Q9NXB9 296 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 BACE2Q9Y5Z0 518 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 COL4A6Q14031 1691 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 MAGEB17A8MXT2 336 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 LZTS3O60299 673 aaPredicted RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 CCT3P49368 545 aaKnown RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 KIAA0040Q15053 153 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 YIF1BQ5BJH7 314 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 C22orf42Q6IC83 251 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 ADAMTSL2Q86TH1 951 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 KRT73Q86Y46 540 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 ATP6V1C2Q8NEY4 427 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 OR6C4Q8NGE1 309 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 NELL1Q92832 810 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 SH3KBP1Q96B97 665 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 APIPQ96GX9 242 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 MCCC1Q96RQ3 725 aaPredicted RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 MTERF1Q99551 399 aaKnown RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 CCDC32Q9BV29 185 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 CLMPQ9H6B4 373 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 RNF121Q9H920 327 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 CREBZFQ9NS37 354 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 FBXO9Q9UK97 447 aaPredicted RBP13.32□□□□□ -0.28
SDC1-202ENST00000381150 PCDHB9Q9Y5E1 797 aa13.32□□□□□ -0.28
SDC1-202ENST00000381150 HSPE1-MOB4S4R3N1 261 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms