RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PRRC2AP48634 2157 aaKnown RBP12.93□□□□□ -0.34
VPS29-201ENST00000360579 TCRBV16S1A1N1A0A5B0 115 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 CTAGE9A4FU28 777 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 OR14I1A6ND48 311 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 FAM47E-STBD1D6RA91 191 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 PSMD12O00232 456 aaPredicted RBP12.92□□□□□ -0.34
VPS29-201ENST00000360579 BCKDKO14874 412 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 LCMT2O60294 686 aaKnown RBP12.92□□□□□ -0.34
VPS29-201ENST00000360579 B4GALT2O60909 372 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 PDE9AO76083 593 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 ACVR2AP27037 513 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 ZFP36L2P47974 494 aaKnown RBP12.92□□□□□ -0.34
VPS29-201ENST00000360579 GPR85P60893 370 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 FOXD4Q12950 439 aaPredicted RBP12.92□□□□□ -0.34
VPS29-201ENST00000360579 TERF2Q15554 542 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 CEBPEQ15744 281 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 GXYLT1Q4G148 440 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 DEFB134Q4QY38 66 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 CYHR1Q6ZMK1 362 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 ABHD13Q7L211 337 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 GPALPP1Q8IXQ4 340 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 ZNF740Q8NDX6 193 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 NFAM1Q8NET5 270 aaPredicted RBP12.92□□□□□ -0.34
VPS29-201ENST00000360579 GIMAP7Q8NHV1 300 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 SLC30A3Q99726 388 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 SARGQ9BW04 601 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 CLEC4MQ9H2X3 399 aaPredicted RBP12.92□□□□□ -0.34
VPS29-201ENST00000360579 PRDM9Q9NQV7 894 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 DLL4Q9NR61 685 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 DHRS7Q9Y394 339 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 REXO2Q9Y3B8 237 aaKnown RBP12.92□□□□□ -0.34
VPS29-201ENST00000360579 COMMD10Q9Y6G5 202 aa12.92□□□□□ -0.34
VPS29-201ENST00000360579 FLNAP21333 2647 aaKnown RBP12.91□□□□□ -0.34
VPS29-201ENST00000360579 NPIPA2E9PIF3 369 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 NPIPA3F8WFD2 350 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 CEP104O60308 925 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 ITGA10O75578 1167 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 ZSCAN5DPP0CG00 497 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 CDH1P12830 882 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 PTMSP20962 102 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 SSR4P51571 173 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 CCR8P51685 355 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 PPIAP62937 165 aaKnown RBP12.91□□□□□ -0.34
VPS29-201ENST00000360579 RGS1Q08116 209 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 KIF5AQ12840 1032 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 SNX1Q13596 522 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 SLC25A35Q3KQZ1 300 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 ZNF470Q6ECI4 717 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 AGTRAPQ6RW13 159 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 LCTLQ6UWM7 567 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 ARSKQ6UWY0 536 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 B3GNT6Q6ZMB0 384 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 MDGA2Q7Z553 956 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 CAMKMTQ7Z624 323 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 STRA8Q7Z7C7 330 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 SLC13A5Q86YT5 568 aaPredicted RBP12.91□□□□□ -0.34
VPS29-201ENST00000360579 PALM2Q8IXS6 379 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 B3GNT7Q8NFL0 401 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 TTYH2Q9BSA4 534 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 HAUS8Q9BT25 410 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 TRIM5Q9C035 493 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 DEFB127Q9H1M4 99 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 ZDHHC11Q9H8X9 412 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 FBXW2Q9UKT8 454 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 ERVK-11Q9UQG0 969 aa12.91□□□□□ -0.34
VPS29-201ENST00000360579 YARS2Q9Y2Z4 477 aaKnown RBP12.91□□□□□ -0.34
VPS29-201ENST00000360579 IGKV3D-11A0A0A0MRZ8 115 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 TRBV11-1A0A0K0K1C0 115 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 URADA6NGE7 173 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 OR1F1O43749 312 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 C8GP07360 202 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 RNH1P13489 461 aaKnown RBP12.9□□□□□ -0.34
VPS29-201ENST00000360579 TPSB2P20231 275 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 DGKQP52824 942 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 OLR1P78380 273 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 BTG2P78543 158 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 SARNPP82979 210 aaKnown RBP12.9□□□□□ -0.34
VPS29-201ENST00000360579 PLGLB1Q02325 96 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 THOC5Q13769 683 aaKnown RBP12.9□□□□□ -0.34
VPS29-201ENST00000360579 TPSAB1Q15661 275 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 NDUFAF5Q5TEU4 345 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 PIWIL4Q7Z3Z4 852 aaKnown RBP12.9□□□□□ -0.34
VPS29-201ENST00000360579 BIVMQ86UB2 503 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 SLC22A16Q86VW1 577 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 APCDD1LQ8NCL9 501 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 RNF214Q8ND24 703 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 PSD4Q8NDX1 1056 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 ACRBPQ8NEB7 543 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 ABHD11Q8NFV4 315 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 GOT1L1Q8NHS2 421 aaPredicted RBP12.9□□□□□ -0.34
VPS29-201ENST00000360579 VMP1Q96GC9 406 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 SMC6Q96SB8 1091 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 GPR21Q99679 349 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 CCDC77Q9BR77 488 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 SGPP1Q9BX95 441 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 TSPY26PQ9H489 355 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 GSX1Q9H4S2 264 aaPredicted RBP12.9□□□□□ -0.34
VPS29-201ENST00000360579 RASSF1Q9NS23 344 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 PNPLA3Q9NST1 481 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 ZNF358Q9NW07 568 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms