RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 MMP11P24347 488 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 HNRNPH1P31943 449 aaKnown RBP14.4□□□□□ -0.1
LIG1-219ENST00000600055 CCL11P51671 97 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 EFNA3P52797 238 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 PCDH1Q08174 1060 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 KCNAB2Q13303 367 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 LAPTM5Q13571 262 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 E2F2Q14209 437 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 HERC3Q15034 1050 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 APLFQ8IW19 511 aaPredicted RBP14.4□□□□□ -0.1
LIG1-219ENST00000600055 TTLQ8NG68 377 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 OR51Q1Q8NH59 317 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 SMIM10Q96HG1 83 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 PITHD1Q9GZP4 211 aaPredicted RBP14.4□□□□□ -0.1
LIG1-219ENST00000600055 IPPKQ9H8X2 491 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 PPCSQ9HAB8 311 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 P4HTMQ9NXG6 502 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 C3orf18Q9UK00 162 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 TMCO1Q9UM00 188 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 TNPO3Q9Y5L0 923 aaKnown RBP14.4□□□□□ -0.1
LIG1-219ENST00000600055 HS3ST3B1Q9Y662 390 aa14.4□□□□□ -0.1
LIG1-219ENST00000600055 CCDC88CQ9P219 2028 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 CHD6Q8TD26 2715 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 A0A0G2JN53 185 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 LRIT2A6NDA9 550 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 OR2W5A6NFC9 320 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 STX16-NPEPL1H3BU86 382 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 OR7A17O14581 309 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 STX16O14662 325 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 CDH16O75309 829 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 ALOX12BO75342 701 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 CLEC3AO75596 197 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 BMP10O95393 424 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 PCNAP12004 261 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 XCR1P46094 333 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 EMP2P54851 167 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 RASA2Q15283 850 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 RBBP7Q16576 425 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 HIST2H2ACQ16777 129 aaPredicted RBP14.39□□□□□ -0.11
LIG1-219ENST00000600055 PAGE2BQ5JRK9 111 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 HIST2H2AA3Q6FI13 130 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 FAAH2Q6GMR7 532 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 GRHL2Q6ISB3 625 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 MED27Q6P2C8 311 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 KIRREL2Q6UWL6 708 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 ABHD13Q7L211 337 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 MYLK4Q86YV6 388 aaPredicted RBP14.39□□□□□ -0.11
LIG1-219ENST00000600055 RNF175Q8N4F7 328 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 C8orf44Q96CB5 159 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 MS4A6EQ96DS6 147 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 ABHD17AQ96GS6 310 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 CDK15Q96Q40 435 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 RBCK1Q9BYM8 510 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 TGIF2Q9GZN2 237 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 RHBGQ9H310 441 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 NOL11Q9H8H0 719 aaKnown RBP14.39□□□□□ -0.11
LIG1-219ENST00000600055 ZBTB26Q9HCK0 441 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 SEMA3GQ9NS98 782 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 C14orf105Q9NVL8 296 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 PCTPQ9UKL6 214 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 EMCNQ9ULC0 261 aa14.39□□□□□ -0.11
LIG1-219ENST00000600055 URADA6NGE7 173 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 A6NL46 340 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 IDSB3KWA1 339 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 K7EM74 188 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 PEX12O00623 359 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 ERI3O43414 337 aaKnown RBP14.38□□□□□ -0.11
LIG1-219ENST00000600055 CHST10O43529 356 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 DLX3O60479 287 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 SH3BGRLO75368 114 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 C1QL1O75973 258 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 HEXBP07686 556 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 GSTA1P08263 222 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 RPS17P08708 135 aaKnown RBP14.38□□□□□ -0.11
LIG1-219ENST00000600055 TSPAN8P19075 237 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 NR1D1P20393 614 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 STXBP1P61764 594 aaKnown RBP14.38□□□□□ -0.11
LIG1-219ENST00000600055 BTN3A2P78410 334 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 IFFO1Q0D2I5 559 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 FAM219BQ5XKK7 198 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 MED25Q71SY5 747 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 LCA5Q86VQ0 697 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 LAS2Q8IYD9 372 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 C4orf33Q8N1A6 199 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 OR7G3Q8NG95 312 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 OR52B6Q8NGF0 335 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 ZNF473Q8WTR7 871 aaKnown RBP14.38□□□□□ -0.11
LIG1-219ENST00000600055 PEX11GQ96HA9 241 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 IP6K3Q96PC2 410 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 F2RL3Q96RI0 385 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 ADNPQ9H2P0 1102 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 C12orf65Q9H3J6 166 aaKnown RBP14.38□□□□□ -0.11
LIG1-219ENST00000600055 ACTR8Q9H981 624 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 PRM3Q9NNZ6 103 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 ZNF71Q9NQZ8 489 aaPredicted RBP14.38□□□□□ -0.11
LIG1-219ENST00000600055 DCDC2Q9UHG0 476 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 FBXL4Q9UKA2 621 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 MKL2Q9ULH7 1088 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 PLAAQ9Y263 795 aa14.38□□□□□ -0.11
LIG1-219ENST00000600055 RNF11Q9Y3C5 154 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms