RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 BIRC8Q96P09 236 aa9.46□□□□□ -0.9
TRIM28-210ENST00000597618 SMC6Q96SB8 1091 aa9.46□□□□□ -0.9
TRIM28-210ENST00000597618 MACROD1Q9BQ69 325 aa9.46□□□□□ -0.9
TRIM28-210ENST00000597618 DEFB127Q9H1M4 99 aa9.46□□□□□ -0.9
TRIM28-210ENST00000597618 ZDHHC11Q9H8X9 412 aa9.46□□□□□ -0.9
TRIM28-210ENST00000597618 B4GALT7Q9UBV7 327 aa9.46□□□□□ -0.9
TRIM28-210ENST00000597618 Q9UFV3 132 aa9.46□□□□□ -0.9
TRIM28-210ENST00000597618 SLC22A7Q9Y694 548 aa9.46□□□□□ -0.9
TRIM28-210ENST00000597618 TLN2Q9Y4G6 2542 aa9.46□□□□□ -0.9
TRIM28-210ENST00000597618 PHF3Q92576 2039 aaKnown RBP9.45□□□□□ -0.9
TRIM28-210ENST00000597618 ZNF860A6NHJ4 632 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 PFDN6O15212 129 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 CBFA2T2O43439 604 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 ATE1O95260 518 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 SYF2O95926 243 aaKnown RBP9.45□□□□□ -0.9
TRIM28-210ENST00000597618 CHRM3P20309 590 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 FMO4P31512 558 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 FDFT1P37268 417 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 ADARP55265 1226 aaKnown RBP9.45□□□□□ -0.9
TRIM28-210ENST00000597618 PPIAP62937 165 aaKnown RBP9.45□□□□□ -0.9
TRIM28-210ENST00000597618 PLGLB1Q02325 96 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 KCNJ11Q14654 390 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 TTLL9Q3SXZ7 439 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 PCID2Q5JVF3 399 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 MRNIPQ6NTE8 343 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 NIPAL1Q6NVV3 410 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 ZNF585AQ6P3V2 769 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 QSOX2Q6ZRP7 698 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 MDGA2Q7Z553 956 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 WDR53Q7Z5U6 358 aaPredicted RBP9.45□□□□□ -0.9
TRIM28-210ENST00000597618 SDCCAG8Q86SQ7 713 aaPredicted RBP9.45□□□□□ -0.9
TRIM28-210ENST00000597618 SLC22A16Q86VW1 577 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 PRIMA1Q86XR5 153 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 CNGA4Q8IV77 575 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 LRRC56Q8IYG6 542 aaPredicted RBP9.45□□□□□ -0.9
TRIM28-210ENST00000597618 KCT2Q8NC54 265 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 OR5T3Q8NGG3 340 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 SLC35B2Q8TB61 432 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 FAM222BQ8WU58 562 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 SLC13A3Q8WWT9 602 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 LPGAT1Q92604 370 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 ALG3Q92685 438 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 TM4SF19Q96DZ7 209 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 LRRC46Q96FV0 321 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 CALR3Q96L12 384 aaKnown RBP9.45□□□□□ -0.9
TRIM28-210ENST00000597618 PCBD2Q9H0N5 130 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 ETNK1Q9HBU6 452 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 DMRT3Q9NQL9 472 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 CCDC177Q9NQR7 707 aaPredicted RBP9.45□□□□□ -0.9
TRIM28-210ENST00000597618 CHRAC1Q9NRG0 131 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 TREX1Q9NSU2 369 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 FAM215AQ9Y5M1 114 aa9.45□□□□□ -0.9
TRIM28-210ENST00000597618 ZNF407Q9C0G0 2248 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 TRBV11-1A0A0K0K1C0 115 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 FEZF1A0PJY2 475 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 FAM166BA8MTA8 275 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 KIAA1324LA8MWY0 1029 aaPredicted RBP9.44□□□□□ -0.9
TRIM28-210ENST00000597618 E5RI56 91 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 GALR3O60755 368 aaPredicted RBP9.44□□□□□ -0.9
TRIM28-210ENST00000597618 B4GALT2O60909 372 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 WDR1O75083 606 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 ITGA10O75578 1167 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 IGHG3P01860 377 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 HOXC12P31275 282 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 UQCRC1P31930 480 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 GRK3P35626 688 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 ADH7P40394 386 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 SSR4P51571 173 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 CLCN2P51788 898 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 NR0B1P51843 470 aaKnown RBP9.44□□□□□ -0.9
TRIM28-210ENST00000597618 SNTB1Q13884 538 aaKnown RBP9.44□□□□□ -0.9
TRIM28-210ENST00000597618 RPS6KA1Q15418 735 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 TYSND1Q2T9J0 566 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 C1orf185Q5T7R7 199 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 NDUFAF5Q5TEU4 345 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 FBXW10Q5XX13 1052 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 CAPN13Q6MZZ7 669 aaPredicted RBP9.44□□□□□ -0.9
TRIM28-210ENST00000597618 KIAA0408Q6ZU52 694 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 CXXC5Q7LFL8 322 aaKnown RBP9.44□□□□□ -0.9
TRIM28-210ENST00000597618 SLC26A11Q86WA9 606 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 LIX1LQ8IVB5 337 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 VSTM4Q8IW00 320 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 REXO1L1PQ8IX06 675 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 GPALPP1Q8IXQ4 340 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 AFAP1L2Q8N4X5 818 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 PSD4Q8NDX1 1056 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 NFAM1Q8NET5 270 aaPredicted RBP9.44□□□□□ -0.9
TRIM28-210ENST00000597618 CCDC138Q96M89 665 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 PTCHD1Q96NR3 888 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 TCF12Q99081 682 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 ATG10Q9H0Y0 220 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 NEUROD4Q9HD90 331 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 CBLCQ9ULV8 474 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 TFR2Q9UP52 801 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 ERVK-11Q9UQG0 969 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 PCDHA13Q9Y5I0 950 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 HIVEP2P31629 2446 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 NBEAL1Q6ZS30 2694 aa9.44□□□□□ -0.9
TRIM28-210ENST00000597618 FBN1P35555 2871 aaKnown RBP9.43□□□□□ -0.9
TRIM28-210ENST00000597618 IGKV3D-11A0A0A0MRZ8 115 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms