RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SERPINA6P08185 405 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 ZNF888P0CJ79 500 aaPredicted RBP5.22□□□□□ -1.57
VPS13C-209ENST00000560637 MPC1LP0DKB6 136 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 UMPSP11172 480 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 ST6GAL1P15907 406 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 RPS3P23396 243 aaKnown RBP eCLIP5.22□□□□□ -1.57
VPS13C-209ENST00000560637 ATP6V1E1P36543 226 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 ARHGDIAP52565 204 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 LRP8Q14114 963 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 FZD2Q14332 565 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 ZNHIT3Q15649 155 aaPredicted RBP5.22□□□□□ -1.57
VPS13C-209ENST00000560637 GPR68Q15743 365 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 GTDC1Q4AE62 458 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 KRT80Q6KB66 452 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 NOXRED1Q6NXP6 359 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 AMIGO2Q86SJ2 522 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 CNTN4Q8IWV2 1026 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.22□□□□□ -1.57
VPS13C-209ENST00000560637 CLECL1Q8IZS7 167 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 TP53I13Q8NBR0 393 aaPredicted RBP5.22□□□□□ -1.57
VPS13C-209ENST00000560637 BHLHE22Q8NFJ8 381 aaPredicted RBP5.22□□□□□ -1.57
VPS13C-209ENST00000560637 OR5K2Q8NHB8 316 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 RHEBL1Q8TAI7 183 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 NELL1Q92832 810 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 NACC2Q96BF6 587 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 CENPTQ96BT3 561 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 SH3YL1Q96HL8 342 aaPredicted RBP5.22□□□□□ -1.57
VPS13C-209ENST00000560637 OR6C1Q96RD1 312 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 ZFYVE21Q9BQ24 234 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 TRIM15Q9C019 465 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 VCX3BQ9H321 246 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 ANKRA2Q9H9E1 313 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 SAR1AQ9NR31 198 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 FGF21Q9NSA1 209 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 KCMF1Q9P0J7 381 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 ERVK-11Q9UQG0 969 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 ORC6Q9Y5N6 252 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 SCN3AQ9NY46 2000 aa5.22□□□□□ -1.57
VPS13C-209ENST00000560637 ROS1P08922 2347 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 EFCAB7A8K855 629 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 H7C0S8 307 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 MATN2O00339 956 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 DLL1O00548 723 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 SDHDO14521 159 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 HAT1O14929 419 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 HRO43593 1189 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 VPS4BO75351 444 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 SMNDC1O75940 238 aaKnown RBP eCLIP5.21□□□□□ -1.57
VPS13C-209ENST00000560637 BCKDHAP12694 445 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 UGT2B7P16662 529 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 TACR1P25103 407 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 PTX3P26022 381 aaPredicted RBP5.21□□□□□ -1.57
VPS13C-209ENST00000560637 PTPN4P29074 926 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 ETV4P43268 484 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 MASP1P48740 699 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 DUSP3P51452 185 aaPredicted RBP5.21□□□□□ -1.57
VPS13C-209ENST00000560637 ERVK-8P63133 956 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 SRSF11Q05519 484 aaKnown RBP5.21□□□□□ -1.57
VPS13C-209ENST00000560637 CHRNB3Q05901 458 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 CSTF3Q12996 717 aaKnown RBP5.21□□□□□ -1.57
VPS13C-209ENST00000560637 LAPTM5Q13571 262 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 KCNC3Q14003 757 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 NSDHLQ15738 373 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 SYT16Q17RD7 645 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 DUOXA1Q1HG43 343 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 TBCELQ5QJ74 424 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 METRNLQ641Q3 311 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 DEF8Q6ZN54 512 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 COMMD6Q7Z4G1 85 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 SMYD1Q8NB12 490 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 TRPV3Q8NET8 790 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 OR5T3Q8NGG3 340 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 DENND1AQ8TEH3 1009 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 CYGBQ8WWM9 190 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 MSANTD3Q96H12 275 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 UBXN10Q96LJ8 280 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 LYSMD1Q96S90 227 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 P2RY12Q9H244 342 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 SOX17Q9H6I2 414 aaPredicted RBP5.21□□□□□ -1.57
VPS13C-209ENST00000560637 N6AMT1Q9Y5N5 214 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 IGF2RP11717 2491 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 TECTAO75443 2155 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 ALPK2Q86TB3 2170 aa5.21□□□□□ -1.57
VPS13C-209ENST00000560637 KIR2DS5A0A0G2JLQ3 304 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 A0A0G2JNG1 304 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 SPAARA0A1B0GVQ0 90 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 H0YGG7 62 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 KIR2DS3K7RE56 304 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 GTPBP1O00178 669 aaKnown RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 STX16O14662 325 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 PDPK1O15530 556 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 DIRAS1O95057 198 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ZBTB11O95625 1053 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 IGHV4-34P06331 123 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 FHP07954 510 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 NQO1P15559 274 aaKnown RBP5.21□□□□□ -1.58
VPS13C-209ENST00000560637 AGXTP21549 392 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ME2P23368 584 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 XKP51811 444 aa5.21□□□□□ -1.58
VPS13C-209ENST00000560637 ARF3P61204 181 aaPredicted RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms