RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 RHBGQ9H310 441 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 USP36Q9P275 1121 aaKnown RBP12.15□□□□□ -0.46
SHMT2-229ENST00000557348 HS3ST3A1Q9Y663 406 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 TRPM6Q9BX84 2022 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 ANKDD1BA6NHY2 528 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 EVPLLA8MZ36 301 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 H3BMQ9 156 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 SCAMP2O15127 329 aaKnown RBP12.14□□□□□ -0.47
SHMT2-229ENST00000557348 SLC31A1O15431 190 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 LATO43561 262 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 COX7A2P14406 83 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 CCNA2P20248 432 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 STT3AP46977 705 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 HLCSP50747 726 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 CCR5P51681 352 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 RPS13P62277 151 aaKnown RBP12.14□□□□□ -0.47
SHMT2-229ENST00000557348 MERTKQ12866 999 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 LRRC32Q14392 662 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 ZNF846Q147U1 533 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 DUOXA1Q1HG43 343 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 RUNDC3AQ59EK9 446 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 PRR23CQ6ZRP0 262 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 PAGE2Q7Z2X7 111 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 FAM129CQ86XR2 697 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 C1orf52Q8N6N3 182 aaKnown RBP12.14□□□□□ -0.47
SHMT2-229ENST00000557348 NATD1Q8N6N6 113 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 OR2T12Q8NG77 320 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 KLK6Q92876 244 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 NSMCE2Q96MF7 247 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 PPM1MQ96MI6 270 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 COG8Q96MW5 612 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 RDH12Q96NR8 316 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 CAMK1GQ96NX5 476 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 THUMPD3Q9BV44 507 aaKnown RBP12.14□□□□□ -0.47
SHMT2-229ENST00000557348 SPATA9Q9BWV2 254 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 MROQ9BYG7 248 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 KIR3DX1Q9H7L2 352 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 INIPQ9NRY2 104 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 SELENONQ9NZV5 590 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 BTNL2Q9UIR0 455 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 MOSPD1Q9UJG1 213 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 MRPS17Q9Y2R5 130 aaKnown RBP12.14□□□□□ -0.47
SHMT2-229ENST00000557348 GPSM3Q9Y4H4 160 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 PCDHB11Q9Y5F2 797 aa12.14□□□□□ -0.47
SHMT2-229ENST00000557348 PCYT1BQ9Y5K3 369 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-229ENST00000557348 TRBV5-3A0A0A0MS03 114 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 GNG14A0A1W2PPG7 69 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PDZK1P1A8MUH7 402 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 FAM220BPB1ANY3 271 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CHURC1-FNTBB4DL54 471 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 RFXANKO14593 260 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 GSTA4O15217 222 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PCDH7O60245 1069 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SCELO95171 688 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ZBTB11O95625 1053 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SEMA4FO95754 770 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CDH1P12830 882 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 GABRG2P18507 467 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ATP6V1B2P21281 511 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PKLRP30613 574 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 MAT2AP31153 395 aaKnown RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 GRK3P35626 688 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ARFIP1P53367 373 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PPP2CBP62714 309 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PPP2CAP67775 309 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 REEP5Q00765 189 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 EPS8Q12929 822 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 TDGQ13569 410 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SMAD2Q15796 467 aaKnown RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PGS1Q32NB8 556 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CATSPEREQ5SY80 951 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CYP2R1Q6VVX0 501 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ZNF852Q6ZMS4 543 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SPRED1Q7Z699 444 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 METTL4Q8N3J2 472 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 FAM47BQ8NA70 645 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CLHC1Q8NHS4 586 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SNX19Q92543 992 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CENPNQ96H22 339 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 INSM2Q96T92 566 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 MENTQ9BUN1 341 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ADI1Q9BV57 179 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 BHLHE41Q9C0J9 482 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 GORASP2Q9H8Y8 452 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CARS2Q9HA77 564 aaKnown RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 HMG20AQ9NP66 347 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 MYNNQ9NPC7 610 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 TM7SF3Q9NS93 570 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SLAMF8Q9P0V8 285 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 TAC3Q9UHF0 121 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ANAPC2Q9UJX6 822 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PCOLCE2Q9UKZ9 415 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 INVSQ9Y283 1065 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 AP1M2Q9Y6Q5 423 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 LAMA2P24043 3122 aaKnown RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SAC3D1A6NKF1 404 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 MAGEB3O15480 346 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ANXA6P08133 673 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 MTHFD1P11586 935 aaKnown RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 GGT1P19440 569 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms