RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 NUDT18Q6ZVK8 323 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 SLC43A3Q8NBI5 491 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 BARD1Q99728 777 aaKnown RBP14.3□□□□□ -0.12
CUX1-215ENST00000556210 ZSCAN5AQ9BUG6 496 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 HEBP1Q9NRV9 189 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 PRNPP04156 253 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 IFNW1P05000 195 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 IL3P08700 152 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 C1SP09871 688 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 ADH5P11766 374 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 ZNF8P17098 575 aaPredicted RBP14.3□□□□□ -0.12
CUX1-215ENST00000556210 IFI44LQ53G44 452 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 DCP2Q8IU60 420 aaKnown RBP14.3□□□□□ -0.12
CUX1-215ENST00000556210 ARMC8Q8IUR7 673 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 TMEM145Q8NBT3 493 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 OR9Q2Q8NGE9 314 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 SLC9A6Q92581 669 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 PPP1R16AQ96I34 528 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 RHNO1Q9BSD3 238 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 SLC12A9Q9BXP2 914 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 DCSTAMPQ9H295 470 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 ZCCHC3Q9NUD5 404 aaKnown RBP14.3□□□□□ -0.12
CUX1-215ENST00000556210 STOX2Q9P2F5 926 aaPredicted RBP14.3□□□□□ -0.12
CUX1-215ENST00000556210 FAM155AB1AL88 458 aaPredicted RBP14.3□□□□□ -0.12
CUX1-215ENST00000556210 AOAHP28039 575 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 SUOXP51687 545 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 PTPN5P54829 565 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 VLDLRP98155 873 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 GRIK2Q13002 908 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 RUNDC3AQ59EK9 446 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 MACC1Q6ZN28 852 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 CEP68Q76N32 757 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 FAM217AQ8IXS0 508 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 KCT2Q8NC54 265 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 RAD51AP1Q96B01 352 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 UHRF1Q96T88 793 aaPredicted RBP14.3□□□□□ -0.12
CUX1-215ENST00000556210 BRINP2Q9C0B6 783 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 EHD1Q9H4M9 534 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 AP3M1Q9Y2T2 418 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 A0A096LPI6 279 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 ABHD14A-ACY1A0A1B0GW23 586 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 EFCAB10A6NFE3 127 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 GABRR3A8MPY1 467 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 CKMT1AP12532 417 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 CRHBPP24387 322 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 C21orf33P30042 268 aaPredicted RBP14.29□□□□□ -0.12
CUX1-215ENST00000556210 TARDBPQ13148 414 aaKnown RBP eCLIP14.29□□□□□ -0.129e-7■■■■□ 26.1
CUX1-215ENST00000556210 XKR7Q5GH72 579 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 KIAA1324Q6UXG2 1013 aaKnown RBP14.29□□□□□ -0.12
CUX1-215ENST00000556210 ZNF548Q8NEK5 533 aaPredicted RBP14.29□□□□□ -0.12
CUX1-215ENST00000556210 C17orf62Q9BQA9 187 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 ABCD2Q9UBJ2 740 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 HCFC2Q9Y5Z7 792 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 MICAL3Q7RTP6 2002 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 WDR81Q562E7 1941 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 MYL12BO14950 172 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 CD160O95971 181 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 C1QCP02747 245 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 ALPLP05186 524 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 JUPP14923 745 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 TIE1P35590 1138 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 MLLT10P55197 1068 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 RPS26P11Q5JNZ5 115 aaPredicted RBP14.29□□□□□ -0.12
CUX1-215ENST00000556210 PRAMEF14Q5SWL7 426 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 PRAMEF13Q5VWM6 474 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 OR2A12Q8NGT7 310 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 STARD8Q92502 1023 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 ITPKCQ96DU7 683 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 FNDC11Q9BVV2 318 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 VN1R3Q9BXE9 311 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 P2RY12Q9H244 342 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 CCNB1IP1Q9NPC3 277 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 FZD3Q9NPG1 666 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 DNAJC27Q9NZQ0 273 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 SARDHQ9UL12 918 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 EPHA2P29317 976 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 NKG7Q16617 165 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 TIGD6Q17RP2 521 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 ERICH5Q6P6B1 374 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 ANKRD13BQ86YJ7 626 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 RASGEF1AQ8N9B8 481 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 AQP11Q8NBQ7 271 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 NDNFQ8TB73 568 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 RIMKLBQ9ULI2 386 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 PCDHGB3Q9Y5G1 929 aa14.29□□□□□ -0.12
CUX1-215ENST00000556210 GSAPA4D1B5 854 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 ARHGEF9O43307 516 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 STSP08842 583 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 FPR1P21462 350 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 METAP1P53582 386 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 MLLT1Q03111 559 aaPredicted RBP14.28□□□□□ -0.12
CUX1-215ENST00000556210 DSG4Q86SJ6 1040 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 OR5AR1Q8NGP9 310 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 WDR48Q8TAF3 677 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 ASB11Q8WXH4 323 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 DCAF13Q9NV06 445 aaKnown RBP14.28□□□□□ -0.12
CUX1-215ENST00000556210 CLN6Q9NWW5 311 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 ENTPD4Q9Y227 616 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 FAM92AA1XBS5 289 aa14.28□□□□□ -0.12
CUX1-215ENST00000556210 C1QTNF3-AMACRE9PGA6 284 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms