RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 PRRT4C9JH25 899 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 K7ESM1 405 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 SCN2BO60939 215 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 COX7A2P14406 83 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 ZNF30P17039 623 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 PRPH2P23942 346 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 HOXD12P35452 270 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 TRPC1P48995 793 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 PPP5CP53041 499 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 ITGA1P56199 1179 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 ST8SIA6P61647 398 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 GGTA1PQ4G0N0 100 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 ZDHHC20Q5W0Z9 365 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 FAHD1Q6P587 224 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 PGBD3Q8N328 593 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 PROX1Q92786 737 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 C19orf43Q9BQ61 176 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 DNAJC11Q9NVH1 559 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 PCDHGA6Q9Y5G7 932 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 GPC6Q9Y625 555 aaPredicted RBP12.05□□□□□ -0.48
RNF4-222ENST00000541204 MYO1DO94832 1006 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 PRPS1L1P21108 318 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 IRF8Q02556 426 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 FADDQ13158 208 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 NAE1Q13564 534 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 XKR6Q5GH73 641 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 HENMT1Q5T8I9 393 aaKnown RBP12.04□□□□□ -0.48
RNF4-222ENST00000541204 TMEM220Q6QAJ8 160 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 P3H2Q8IVL5 708 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 L3MBTL4Q8NA19 623 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 IPCEF1Q8WWN9 437 aaPredicted RBP12.04□□□□□ -0.48
RNF4-222ENST00000541204 HTRA1Q92743 480 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 MAL2Q969L2 176 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 TMEM159Q96B96 161 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 ZNF707Q96C28 371 aaPredicted RBP12.04□□□□□ -0.48
RNF4-222ENST00000541204 SIGLEC11Q96RL6 698 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 COPS4Q9BT78 406 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 RNF6Q9Y252 685 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 E7EQ34 232 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 GFYI3L273 518 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 AIREO43918 545 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 FGF19O95750 216 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 C9P02748 559 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 EIF2DP41214 584 aaKnown RBP12.04□□□□□ -0.48
RNF4-222ENST00000541204 SLC6A12P48065 614 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 CRYBA2P53672 197 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 PFN3P60673 137 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 TMEM115Q12893 351 aaPredicted RBP12.04□□□□□ -0.48
RNF4-222ENST00000541204 DMC1Q14565 340 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 CARTPTQ16568 116 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 IQCCQ4KMZ1 466 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 FNDC3BQ53EP0 1204 aaKnown RBP12.04□□□□□ -0.48
RNF4-222ENST00000541204 COLEC12Q5KU26 742 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 PLEKHS1Q5SXH7 462 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 UBE2UQ5VVX9 321 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 FAM109BQ6ICB4 259 aaPredicted RBP12.04□□□□□ -0.48
RNF4-222ENST00000541204 LIPIQ6XZB0 460 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 ADGRD2Q7Z7M1 963 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 CSGALNACT1Q8TDX6 532 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 BTN2A2Q8WVV5 523 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 SMG7Q92540 1137 aaKnown RBP12.04□□□□□ -0.48
RNF4-222ENST00000541204 SLC38A4Q969I6 547 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 PITX2Q99697 317 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 C6orf62Q9GZU0 229 aaPredicted RBP12.04□□□□□ -0.48
RNF4-222ENST00000541204 BTBD3Q9Y2F9 522 aa12.04□□□□□ -0.48
RNF4-222ENST00000541204 ZNF106Q9H2Y7 1883 aaKnown RBP12.03□□□□□ -0.48
RNF4-222ENST00000541204 M0R082 166 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 LAMP1P11279 417 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 CD22P20273 847 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 RRM2P31350 389 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 SEPHS1P49903 392 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 SRSF11Q05519 484 aaKnown RBP12.03□□□□□ -0.48
RNF4-222ENST00000541204 TMEM53Q6P2H8 277 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 ERICH5Q6P6B1 374 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 MSANTD1Q6ZTZ1 278 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 GLYATL1Q969I3 302 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 SH3KBP1Q96B97 665 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 C7orf34Q96L11 122 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 ZSCAN5AQ9BUG6 496 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 TMEM106CQ9BVX2 250 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 EPS8L2Q9H6S3 715 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 RUBCNLQ9H714 662 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 TPT1P8Q9HAU6 139 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 TMEM184CQ9NVA4 438 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 ANKMY1Q9P2S6 941 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 PLXNB3Q9ULL4 1909 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 EYSQ5T1H1 3165 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 TRANK1O15050 2925 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 UPK1BO75841 260 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 SLC16A8O95907 504 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 CISD3P0C7P0 127 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 GADD45AP24522 165 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 HNMTP50135 292 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 TPTEP56180 551 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 KCNJ10P78508 379 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 ZNF404Q494X3 552 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 ERAP2Q6P179 960 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 GPR155Q7Z3F1 870 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 ARMC8Q8IUR7 673 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 LYSMD2Q8IV50 215 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms