RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	SMIM10	Q96HG1	83 aa		19.72	■□□□□ 0.75
CD44-222	ENST00000526025	FRG2B	Q96QU4	278 aa		19.72	■□□□□ 0.75
CD44-222	ENST00000526025	MS4A8	Q9BY19	250 aa		19.72	■□□□□ 0.75
CD44-222	ENST00000526025	GPR87	Q9BY21	358 aa		19.72	■□□□□ 0.75
CD44-222	ENST00000526025	SLC26A1	Q9H2B4	701 aa		19.72	■□□□□ 0.75
CD44-222	ENST00000526025	ANKH	Q9HCJ1	492 aa		19.72	■□□□□ 0.75
CD44-222	ENST00000526025	DMRT3	Q9NQL9	472 aa		19.72	■□□□□ 0.75
CD44-222	ENST00000526025	SNX6	Q9UNH7	406 aa		19.72	■□□□□ 0.75
CD44-222	ENST00000526025	MAP1B	P46821	2468 aa	Known RBP	19.71	■□□□□ 0.75
CD44-222	ENST00000526025		C9J4A7	227 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	OR4F21	O95013	312 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	SNUPN	O95149	360 aa	Known RBP	19.71	■□□□□ 0.75
CD44-222	ENST00000526025	ALB	P02768	609 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	PCNA	P12004	261 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	ALOX12	P18054	663 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	ITGAX	P20702	1163 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	AVPR1B	P47901	424 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	TGM3	Q08188	693 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	IFT88	Q13099	833 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	DSG2	Q14126	1118 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	RCN2	Q14257	317 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	HHAT	Q5VTY9	493 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	ADNP2	Q6IQ32	1131 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	FAM198B	Q6UWH4	519 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	OR2L5	Q8NG80	312 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	UTP15	Q8TED0	518 aa	Known RBP	19.71	■□□□□ 0.75
CD44-222	ENST00000526025	CT55	Q8WUE5	264 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	KIAA1143	Q96AT1	154 aa	Predicted RBP	19.71	■□□□□ 0.75
CD44-222	ENST00000526025	MACROD1	Q9BQ69	325 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	CHST8	Q9H2A9	424 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	ELOVL6	Q9H5J4	265 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	EML4	Q9HC35	981 aa	Known RBP	19.71	■□□□□ 0.75
CD44-222	ENST00000526025	ZNF304	Q9HCX3	659 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	MID1IP1	Q9NPA3	183 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	ACSS2	Q9NR19	701 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	NDOR1	Q9UHB4	597 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	KCND3	Q9UK17	655 aa		19.71	■□□□□ 0.75
CD44-222	ENST00000526025	MRPS2	Q9Y399	296 aa	Known RBP	19.71	■□□□□ 0.75
CD44-222	ENST00000526025	CCDC88C	Q9P219	2028 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025		A0A088AWK7	358 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	TAF4	O00268	1085 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	UBFD1	O14562	309 aa	Known RBP	19.7	■□□□□ 0.74
CD44-222	ENST00000526025	KRT6A	P02538	564 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	STATH	P02808	62 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	KRT6B	P04259	564 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	SERPINE1	P05121	402 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	CAPN1	P07384	714 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	ZNF10	P21506	573 aa	Predicted RBP	19.7	■□□□□ 0.74
CD44-222	ENST00000526025	GRK2	P25098	689 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	PTX3	P26022	381 aa	Predicted RBP	19.7	■□□□□ 0.74
CD44-222	ENST00000526025	HNRNPH1	P31943	449 aa	Known RBP	19.7	■□□□□ 0.74
CD44-222	ENST00000526025	KRT6C	P48668	564 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	WDR4	P57081	412 aa	Known RBP	19.7	■□□□□ 0.74
CD44-222	ENST00000526025	CUL3	Q13618	768 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	TGIF1	Q15583	401 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	TOR1AIP1	Q5JTV8	583 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	C1orf189	Q5VU69	101 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	TTC19	Q6DKK2	380 aa	Predicted RBP	19.7	■□□□□ 0.74
CD44-222	ENST00000526025	CHSY3	Q70JA7	882 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	CCT6B	Q92526	530 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	CENPK	Q9BS16	269 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	REXO4	Q9GZR2	422 aa	Known RBP	19.7	■□□□□ 0.74
CD44-222	ENST00000526025	AICDA	Q9GZX7	198 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	WDR54	Q9H977	334 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	BRF2	Q9HAW0	419 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	SLC22A11	Q9NSA0	550 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	CROT	Q9UKG9	612 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	RAX	Q9Y2V3	346 aa		19.7	■□□□□ 0.74
CD44-222	ENST00000526025	DMXL2	Q8TDJ6	3036 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	IGLV3-12	A0A075B6K2	115 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	LOC101059948	A0A1B0GTJ6	334 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	SERTM1	A2A2V5	107 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	TMEM114	B3SHH9	223 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	GALR3	O60755	368 aa	Predicted RBP	19.69	■□□□□ 0.74
CD44-222	ENST00000526025	HSD3B1	P14060	373 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	FBL	P22087	321 aa	Known RBP	19.69	■□□□□ 0.74
CD44-222	ENST00000526025	HSD3B2	P26439	372 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	TSFM	P43897	325 aa	Known RBP	19.69	■□□□□ 0.74
CD44-222	ENST00000526025	DNASE1L3	Q13609	305 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	NCF4	Q15080	339 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	DEPDC1	Q5TB30	811 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	KHDRBS2	Q5VWX1	349 aa	Known RBP	19.69	■□□□□ 0.74
CD44-222	ENST00000526025	MRPL14	Q6P1L8	145 aa	Known RBP	19.69	■□□□□ 0.74
CD44-222	ENST00000526025	TRIM40	Q6P9F5	258 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	LRRC69	Q6ZNQ3	347 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	COX15	Q7KZN9	410 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	OVCH1	Q7RTY7	1134 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	SPACA3	Q8IXA5	215 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	CDYL2	Q8N8U2	506 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	ANKRD42	Q8N9B4	389 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	ZCCHC10	Q8TBK6	192 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	RAB3IL1	Q8TBN0	382 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	ROGDI	Q9GZN7	287 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	KLHL31	Q9H511	634 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	19.69	■□□□□ 0.74
CD44-222	ENST00000526025	GPN2	Q9H9Y4	310 aa	Predicted RBP	19.69	■□□□□ 0.74
CD44-222	ENST00000526025	IFT80	Q9P2H3	777 aa	Predicted RBP	19.69	■□□□□ 0.74
CD44-222	ENST00000526025	NXT1	Q9UKK6	140 aa	Known RBP	19.69	■□□□□ 0.74
CD44-222	ENST00000526025	MAP4K5	Q9Y4K4	846 aa		19.69	■□□□□ 0.74
CD44-222	ENST00000526025	NUP210L	Q5VU65	1888 aa		19.69	■□□□□ 0.74

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