RNA–Protein interactions for RNA: ENST00000520062.1

HMGB1P46-201, Transcript of high mobility group box 1 pseudogene 46, humanhuman

BASIC

Gene HMGB1P46, Length 610 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P46-201ENST00000520062 ARL16Q0P5N6 197 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 PPP1R8Q12972 351 aaKnown RBP4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 GRB14Q14449 540 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 KIAA1644Q3SXP7 199 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 ZNF672Q499Z4 452 aaPredicted RBP4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 ZNF585BQ52M93 769 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 SLC35E4Q6ICL7 350 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 TMEM207Q6UWW9 146 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 LEKR1Q6ZMV7 388 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 C1orf186Q6ZWK4 172 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 CYP4V2Q6ZWL3 525 aaPredicted RBP4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 SLC16A9Q7RTY1 509 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 KDM8Q8N371 416 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 ZNF843Q8N446 348 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 NIPA2Q8N8Q9 360 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 OR52E1Q8NGJ3 308 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 OR4C3Q8NH37 302 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 SEPT8Q92599 483 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 GIMAP5Q96F15 307 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 C10orf90Q96M02 699 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 SPATA13Q96N96 652 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 KCNK16Q96T55 309 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 KRT23Q9C075 422 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 DDX47Q9H0S4 455 aaKnown RBP4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 PIGVQ9NUD9 493 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 TMOD3Q9NYL9 352 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 ACTR3BQ9P1U1 418 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 ERVK-19Q9WJR5 959 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 NCKAP1Q9Y2A7 1128 aa4.73□□□□□ -1.65
HMGB1P46-201ENST00000520062 A0A087WUV0 522 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 A0A0G2JLW4 131 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 ARHGAP42A6NI28 874 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 A8MVM7 634 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 PSMD3O43242 534 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 TXNL1O43396 289 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 REC8O95072 547 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 CXCL10P02778 98 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 ANPEPP15144 967 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 ARF4P18085 180 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 TNFSF10P50591 281 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 CNN1P51911 297 aaKnown RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 ITGA9Q13797 1035 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 GK2Q14410 553 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 ZNF74Q16587 644 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 C9orf50Q5SZB4 431 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 ZNF776Q68DI1 518 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 OR4C11Q6IEV9 310 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 SLC27A4Q6P1M0 643 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 RBM43Q6ZSC3 357 aaKnown RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 STHQ8IWL8 128 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 ELMOD2Q8IZ81 293 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 KBTBD8Q8NFY9 601 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 APOBEC4Q8WW27 367 aaKnown RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 SENP5Q96HI0 755 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 KRTAP4-9Q9BYQ8 210 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 MMP28Q9H239 520 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 VIPAS39Q9H9C1 493 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 ZNF334Q9HCZ1 680 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 INTS10Q9NVR2 710 aaKnown RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 ZNF624Q9P2J8 865 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 TEKT2Q9UIF3 430 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 DNPEPQ9ULA0 475 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 SH3GLB1Q9Y371 365 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 UMODL1Q5DID0 1318 aa4.72□□□□□ -1.65
HMGB1P46-201ENST00000520062 TRIP12Q14669 1992 aaPredicted RBP4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 CCDC162PA2VCL2 907 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 CFAP73A6NFT4 308 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 SERINC4A6NH21 518 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 NKX6-3A6NJ46 265 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 SNURFLB1AK76 121 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 SMIM1B2RUZ4 78 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 OVOL3O00110 214 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 RASGRF2O14827 1237 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 CHUKO15111 745 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 SYT7O43581 403 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 SSX5O60225 188 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 CYTIPO60759 359 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 STBD1O95210 358 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 NADKO95544 446 aaPredicted RBP4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 EML2O95834 649 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 NGFP01138 241 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 MT-ND2P03891 347 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 PGK2P07205 417 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 SLC2A2P11168 524 aaPredicted RBP4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 ETS1P14921 441 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 DESP17661 470 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 ASMTP46597 345 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 RABIFP47224 123 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 GPC3P51654 580 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 HNRNPFP52597 415 aaKnown RBP4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 DCDC1P59894 354 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 SRP54P61011 504 aaKnown RBP4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 HTD2P86397 168 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 GABPAQ06546 454 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 GPR50Q13585 617 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 CDH18Q13634 790 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 TEAD2Q15562 447 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 INAQ16352 499 aa4.71□□□□□ -1.66
HMGB1P46-201ENST00000520062 STX1AQ16623 288 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms