RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CACNG1Q06432 222 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SULT2A1Q06520 285 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 LTBQ06643 244 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 IL10RBQ08334 325 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 DMWDQ09019 674 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ILF2Q12905 390 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 GRIK3Q13003 919 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 LCP2Q13094 533 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRKAA1Q13131 559 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SRSF5Q13243 272 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 DMP1Q13316 513 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 DRP2Q13474 957 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAB1Q13480 694 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 NAE1Q13564 534 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CUL1Q13616 776 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CUL3Q13618 768 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLF9Q13886 244 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 DHX34Q14147 1143 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SELPLGQ14242 412 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MELKQ14680 651 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MESDQ14696 234 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MVPQ14764 893 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MFSD13AQ14CX5 517 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 LARS2Q15031 903 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 STK38Q15208 465 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 INPP5JQ15735 1006 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHRNA6Q15825 494 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 USF2Q15853 346 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 RBBP7Q16576 425 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 AANATQ16613 207 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 STX1AQ16623 288 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP1B1Q16678 543 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 DECR1Q16698 335 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLPPQ16740 277 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ME3Q16798 604 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MEP1AQ16819 746 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCK2Q16822 640 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYT16Q17RD7 645 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM83EQ2M2I3 478 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 EXOC3L2Q2M3D2 409 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SGSM1Q2NKQ1 1148 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCDC57Q2TAC2 916 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SMTNL2Q2TAL5 461 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 POM121L1PQ3SYA9 428 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANXA2RQ3ZCQ2 193 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 Q3ZCU0 254 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 USH1GQ495M9 461 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MCMDC2Q4G0Z9 681 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 BCL7AQ4VC05 210 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MPPE1Q53F39 396 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDLIM3Q53GG5 364 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ASPRV1Q53RT3 343 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ESCO2Q56NI9 601 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM76BQ5HYJ3 339 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF311Q5JNZ3 666 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CEP78Q5JTW2 689 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPANXN2Q5MJ10 180 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 Q5PR19 223 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 DCST1Q5T197 706 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRIF1Q5T3J3 769 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 STXBP5Q5T5C0 1151 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 LIN9Q5TKA1 542 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 EEF1A1P5Q5VTE0 462 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 DCAF12L2Q5VW00 463 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGAP6Q5VW22 663 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 IL23RQ5VWK5 629 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZDHHC20Q5W0Z9 365 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 LYSMD4Q5XG99 296 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 GGNBP1Q5YKI7 109 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 AP1ARQ63HQ0 302 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 METRNLQ641Q3 311 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 TBC1D9BQ66K14 1250 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM198Q66K66 360 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDPK2PQ6A1A2 396 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 TTC19Q6DKK2 380 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLEC6AQ6EIG7 209 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 HIST2H2AA3Q6FI13 130 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM225Q6GV28 225 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SULT1C3Q6IMI6 304 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRR27Q6MZM9 219 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MFSD12Q6NUT3 480 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADAM5Q6NVV9 412 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PMF1Q6P1K2 205 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ERICH5Q6P6B1 374 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYB5D1Q6P9G0 228 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 AAGABQ6PD74 315 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 TEX38Q6PEX7 206 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PODNL1Q6PEZ8 512 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 FBXO46Q6PJ61 603 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 FIGLAQ6QHK4 219 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 BLOC1S2Q6QNY1 142 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 KIRREL2Q6UWL6 708 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 LCTLQ6UWM7 567 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 C6orf89Q6UWU4 347 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 DLK2Q6UY11 383 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYT10Q6XYQ8 523 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 KIF6Q6ZMV9 814 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF782Q6ZMW2 699 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PQLC2Q6ZP29 291 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDHR3Q6ZTQ4 885 aa0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms