RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 JAK1P23458 1154 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 HNF4AP41235 474 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 REEP5Q00765 189 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 CAV1Q03135 178 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 USP10Q14694 798 aaKnown RBP12□□□□□ -0.49
PTPRF-214ENST00000496043 ABRAXAS2Q15018 415 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 INAQ16352 499 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 SFT2D3Q587I9 215 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 ACER2Q5QJU3 275 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 TMPRSS11BQ86T26 416 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 AMER2Q8N7J2 671 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 ANKRD53Q8N9V6 530 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 DNAJB8Q8NHS0 232 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 UTP15Q8TED0 518 aaKnown RBP12□□□□□ -0.49
PTPRF-214ENST00000496043 RHBDF1Q96CC6 855 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 PTCHD1Q96NR3 888 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 CPNE1Q99829 537 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 DERL2Q9GZP9 239 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 SPNS1Q9H2V7 528 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 MMP25Q9NPA2 562 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 SMYD2Q9NRG4 433 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 ABI3Q9P2A4 366 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 UTP11Q9Y3A2 253 aaKnown RBP12□□□□□ -0.49
PTPRF-214ENST00000496043 USP9YO00507 2555 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-214ENST00000496043 A1L4Q6 167 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 CXorf49A8MYA2 514 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-214ENST00000496043 FANCGO15287 622 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 LRRTM2O43300 516 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 PRMT3O60678 531 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 PRAMEF2O60811 474 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 B4GALT2O60909 372 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 CDC123O75794 336 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-214ENST00000496043 PIAS1O75925 651 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 WDR47O94967 919 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 RASAL1O95294 804 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 B3GALT4O96024 378 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 CRYABP02511 175 aaKnown RBP11.99□□□□□ -0.49
PTPRF-214ENST00000496043 CCDC166P0CW27 439 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 RNF224P0DH78 156 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 SMIM10L1P0DMW3 83 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 STMN1P16949 149 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 GDF5P43026 501 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 RAB8AP61006 207 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 ATP6V0D1P61421 351 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 TGFBIQ15582 683 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 MEP1AQ16819 746 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 CDKL4Q5MAI5 379 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 ZNF324BQ6AW86 544 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-214ENST00000496043 PAPD4Q6PIY7 484 aaKnown RBP11.99□□□□□ -0.49
PTPRF-214ENST00000496043 GPSM1Q86YR5 675 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 KLHDC8AQ8IYD2 350 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 KRT78Q8N1N4 520 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 TCAIMQ8N3R3 496 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 TTLQ8NG68 377 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 SMIM10Q96HG1 83 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 SLX1AQ9BQ83 275 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 RBCK1Q9BYM8 510 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 SLC6A16Q9GZN6 736 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 KLHL31Q9H511 634 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 NT5DC2Q9H857 520 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 SCN3AQ9NY46 2000 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 USP9XQ93008 2570 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-214ENST00000496043 COL12A1Q99715 3063 aa11.99□□□□□ -0.49
PTPRF-214ENST00000496043 NCF1BA6NI72 391 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 FAM159BA6NKW6 160 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 NCF1CA8MVU1 366 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 PSMD12O00232 456 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 E2F3O00716 465 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 CLGNO14967 610 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 RNH1P13489 461 aaKnown RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 NCF1P14598 390 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 SPRP35270 261 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 GGT5P36269 586 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 GP5P40197 560 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 SLC6A12P48065 614 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 PLTPP55058 493 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 PER3P56645 1201 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 TAS2R50P59544 299 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 STXBP1P61764 594 aaKnown RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 ETF1P62495 437 aaKnown RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 OLR1P78380 273 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 C2orf54Q08AI8 447 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 HYAL2Q12891 473 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 C18orf21Q32NC0 220 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 TOR1AIP1Q5JTV8 583 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 GRTP1Q5TC63 336 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 FCRLBQ6BAA4 426 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 HIST2H2BCQ6DN03 193 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 SULT1C3Q6IMI6 304 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 TMIGD1Q6UXZ0 262 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 SLCO4C1Q6ZQN7 724 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 MAMDC2Q7Z304 686 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 CTAGE3PQ8IX95 158 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 CYP4X1Q8N118 509 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 SPATA6LQ8N4H0 392 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 CREB3L4Q8TEY5 395 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 NR4A3Q92570 626 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 TSLPQ969D9 159 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 FAR2Q96K12 515 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 TAAR6Q96RI8 345 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms