RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 POLR2EP19388 210 aaKnown RBP17.25■□□□□ 0.35
VIM-206ENST00000487938 LIPAP38571 399 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 SLC19A1P41440 591 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 SERPINB10P48595 397 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 CBX3Q13185 183 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 GRIN2CQ14957 1233 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 OXA1LQ15070 435 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 TEAD2Q15562 447 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 SPIN4Q56A73 249 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 MED27Q6P2C8 311 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 RBM12BQ8IXT5 1001 aaKnown RBP17.25■□□□□ 0.35
VIM-206ENST00000487938 MFSD4AQ8N468 514 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 IPCEF1Q8WWN9 437 aaPredicted RBP17.25■□□□□ 0.35
VIM-206ENST00000487938 ERLEC1Q96DZ1 483 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 WRAP53Q9BUR4 548 aaKnown RBP17.25■□□□□ 0.35
VIM-206ENST00000487938 BTBD2Q9BX70 525 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 MROQ9BYG7 248 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 ZBP1Q9H171 429 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 ZNF282Q9UDV7 671 aaPredicted RBP17.25■□□□□ 0.35
VIM-206ENST00000487938 MAFFQ9ULX9 164 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 CORO2BQ9UQ03 480 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 EFCAB9A8MZ26 197 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 PPIBP23284 216 aaKnown RBP17.24■□□□□ 0.35
VIM-206ENST00000487938 MVDP53602 400 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 CD300CQ08708 224 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 PPIGQ13427 754 aaKnown RBP eCLIP17.24■□□□□ 0.35
VIM-206ENST00000487938 HIST2H2ACQ16777 129 aaPredicted RBP17.24■□□□□ 0.35
VIM-206ENST00000487938 LILRA6Q6PI73 481 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 TECPR1Q7Z6L1 1165 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 TRIM74Q86UV6 250 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 PLD3Q8IV08 490 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 CFAP206Q8IYR0 622 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 OR5AK3PQ8NH89 298 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 NFKBIDQ8NI38 313 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 WDR48Q8TAF3 677 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 ZNF480Q8WV37 535 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 AP2M1Q96CW1 435 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 FOPNLQ96NB1 174 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 SLC35A5Q9BS91 424 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 SPATA9Q9BWV2 254 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 OR51B5Q9H339 312 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 SPHK2Q9NRA0 654 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 E9PQ18 207 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 J3KTA2 159 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 SERPINB7O75635 380 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 RFPL2O75678 378 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 NUDT6P53370 316 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 CDH12P55289 794 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 DNASE1L3Q13609 305 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 STARD3Q14849 445 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 CAMKMTQ7Z624 323 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 CCDC103Q8IW40 242 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 ZBTB8BQ8NAP8 495 aaPredicted RBP17.24■□□□□ 0.35
VIM-206ENST00000487938 ITFG2Q969R8 447 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 ZHX1-C8orf76Q96EF9 292 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 TOX2Q96NM4 488 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 SIGLEC11Q96RL6 698 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 GABARAPL3Q9BY60 117 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 SLIRPQ9GZT3 109 aaKnown RBP17.24■□□□□ 0.35
VIM-206ENST00000487938 GULP1Q9UBP9 304 aa17.24■□□□□ 0.35
VIM-206ENST00000487938 PRAMEF25A6NGN4 478 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 H3BM21 787 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 RNASET2O00584 256 aaKnown RBP17.23■□□□□ 0.35
VIM-206ENST00000487938 CCL5P13501 91 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 NPPBP16860 134 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 FUT4P22083 530 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 IDH2P48735 452 aaKnown RBP17.23■□□□□ 0.35
VIM-206ENST00000487938 PRLHRP49683 370 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 TBPL1P62380 186 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 SPIBQ01892 262 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 SLBPQ14493 270 aaKnown RBP eCLIP17.23■□□□□ 0.35
VIM-206ENST00000487938 FAM180BQ6P0A1 224 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 CCDC149Q6ZUS6 474 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 ARMCX6Q7L4S7 300 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 OR10G2Q8NGC3 310 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 MRGPRX3Q96LB0 322 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 YME1L1Q96TA2 773 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 NIPSNAP1Q9BPW8 284 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 TCF25Q9BQ70 676 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 REEP4Q9H6H4 257 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 ZBTB20Q9HC78 741 aaPredicted RBP17.23■□□□□ 0.35
VIM-206ENST00000487938 TRIM39Q9HCM9 518 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 FBXO8Q9NRD0 319 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 RAD18Q9NS91 495 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 IL36AQ9UHA7 158 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 ATP11BQ9Y2G3 1177 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 MAP4K5Q9Y4K4 846 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 HCFC2Q9Y5Z7 792 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 DPM1O60762 260 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 ADAM23O75077 832 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 C1orf105O95561 183 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 ELFN1P0C7U0 828 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 POU2F1P14859 743 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 SYN1P17600 705 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 GGT2P36268 569 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 PRIM2P49643 509 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 CLK1P49759 484 aaKnown RBP17.23■□□□□ 0.35
VIM-206ENST00000487938 C2orf80Q0P641 193 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 TEAD4Q15561 434 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 EXOC3L2Q2M3D2 409 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms