RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	CCNYL2	Q5T2Q4	361 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	OR4C11	Q6IEV9	310 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	USP53	Q70EK8	1073 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	DGLUCY	Q7Z3D6	616 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	ASPG	Q86U10	573 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	RIMKLA	Q8IXN7	391 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	DEFB107A	Q8IZN7	70 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	FAM9C	Q8IZT9	166 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	AMER3	Q8N944	861 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	GLB1L3	Q8NCI6	653 aa	Predicted RBP	10.7	□□□□□ -0.7
APTX-223	ENST00000479656	C16orf78	Q8WTQ4	265 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	MS4A6E	Q96DS6	147 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	TM4SF19	Q96DZ7	209 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	ZFYVE21	Q9BQ24	234 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	CENPK	Q9BS16	269 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	THTPA	Q9BU02	230 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	ZNF717	Q9BY31	904 aa	Predicted RBP	10.7	□□□□□ -0.7
APTX-223	ENST00000479656	CLMP	Q9H6B4	373 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	LHX9	Q9NQ69	397 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	C1GALT1	Q9NS00	363 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	MCM8	Q9UJA3	840 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	RAB23	Q9ULC3	237 aa		10.7	□□□□□ -0.7
APTX-223	ENST00000479656	WDFY4	Q6ZS81	3184 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	CACNA1E	Q15878	2313 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	LY6G6E	A0A0G2JKS1	128 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	CPED1	A4D0V7	1026 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	CFAP73	A6NFT4	308 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	BBIP1	A8MTZ0	92 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656		H0YGG7	62 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	KHNYN	O15037	678 aa	Known RBP	10.69	□□□□□ -0.7
APTX-223	ENST00000479656	CFLAR	O15519	480 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	HCRTR1	O43613	425 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	EIF2S1	P05198	315 aa	Known RBP	10.69	□□□□□ -0.7
APTX-223	ENST00000479656	PRPS1L1	P21108	318 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	PGM1	P36871	562 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	ARF3	P61204	181 aa	Predicted RBP	10.69	□□□□□ -0.7
APTX-223	ENST00000479656	RELA	Q04206	551 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	COL9A2	Q14055	689 aa	Predicted RBP	10.69	□□□□□ -0.7
APTX-223	ENST00000479656	NR0B2	Q15466	257 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	PGS1	Q32NB8	556 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	ADPRM	Q3LIE5	342 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	DNAL1	Q4LDG9	190 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	TMEM35A	Q53FP2	167 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	SPANXN4	Q5MJ08	99 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	SLC2A7	Q6PXP3	512 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	MINDY1	Q8N5J2	469 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	KCT2	Q8NC54	265 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	CCDC74A	Q96AQ1	378 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	C17orf62	Q9BQA9	187 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	SLC6A16	Q9GZN6	736 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	RAB33B	Q9H082	229 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	IL1RL2	Q9HB29	575 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	EPHA6	Q9UF33	1036 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	KLHL3	Q9UH77	587 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	PCDHGA5	Q9Y5G8	931 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	10.69	□□□□□ -0.7
APTX-223	ENST00000479656		U3KQA8	63 aa		10.69	□□□□□ -0.7
APTX-223	ENST00000479656	IGHV5-51	A0A0C4DH38	117 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	C4orf51	C9J302	202 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	P2RX6	O15547	441 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	ERI3	O43414	337 aa	Known RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	B3GALT4	O96024	378 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	IL6	P05231	212 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PCSK2	P16519	638 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	CD1C	P29017	333 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	ASMT	P46597	345 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	CLNS1A	P54105	237 aa	Known RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	ATXN3	P54252	364 aa	Predicted RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	TAS2R50	P59544	299 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	RAB8A	P61006	207 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PHC1	P78364	1004 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PLIN5	Q00G26	463 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	MC1R	Q01726	317 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	CFHR1	Q03591	330 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	ZNF763	Q0D2J5	394 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	C2orf80	Q0P641	193 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PWP1	Q13610	501 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	NR1D2	Q14995	579 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	ANKRD26P1	Q6NSI1	321 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	GUSBP11	Q6P575	273 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	ABHD17C	Q6PCB6	329 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	C16orf89	Q6UX73	402 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	RNF44	Q7L0R7	432 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PAGE2	Q7Z2X7	111 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	EFCAB3	Q8N7B9	438 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	C19orf47	Q8N9M1	422 aa	Known RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	FAM181A	Q8N9Y4	354 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PCYOX1L	Q8NBM8	494 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	OR2L5	Q8NG80	312 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	OR7A2P	Q8NGA2	310 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	10.68	□□□□□ -0.7	8e-6	■□□□□ 10.5
APTX-223	ENST00000479656	NT5C	Q8TCD5	201 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	MCUR1	Q96AQ8	359 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	THAP11	Q96EK4	314 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	ZDHHC12	Q96GR4	267 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	CLPTM1L	Q96KA5	538 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	TEFM	Q96QE5	360 aa	Known RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	WDR41	Q9HAD4	459 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PRDM7	Q9NQW5	492 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	SLAMF8	Q9P0V8	285 aa		10.68	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms