RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 TPRG1LQ5T0D9 272 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 SYCE2Q6PIF2 218 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 FIGNL1Q6PIW4 674 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 CARM1Q86X55 608 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 TMEM25Q86YD3 366 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 TMEFF1Q8IYR6 380 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 SCML4Q8N228 414 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 SLC5A8Q8N695 610 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF433Q8N7K0 673 aaPredicted RBP4.81□□□□□ -1.64
CCDC39-204ENST00000476379 LGALS12Q96DT0 336 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 RNFT2Q96EX2 444 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 ZSWIM3Q96MP5 696 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF599Q96NL3 588 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 FCRL4Q96PJ5 515 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 CLSTN3Q9BQT9 956 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 SLC35A5Q9BS91 424 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 CRISPLD2Q9H0B8 497 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 FAM83DQ9H4H8 585 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 ELAC1Q9H777 363 aaKnown RBP4.81□□□□□ -1.64
CCDC39-204ENST00000476379 PAK1IP1Q9NWT1 392 aaPredicted RBP4.81□□□□□ -1.64
CCDC39-204ENST00000476379 IL37Q9NZH6 218 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 TAC3Q9UHF0 121 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 YIPF1Q9Y548 306 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 PCDHGA3Q9Y5H0 932 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 ZFYVE26Q68DK2 2539 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 TRAV6A0A075B6T7 132 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 BBIP1A8MTZ0 92 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 TTC34A8MYJ7 566 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 FAM220BPB1ANY3 271 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 CATP04040 527 aaKnown RBP4.81□□□□□ -1.64
CCDC39-204ENST00000476379 ACP5P13686 325 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 GRPRP30550 384 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 SNRPD1P62314 119 aaKnown RBP4.81□□□□□ -1.64
CCDC39-204ENST00000476379 MRPL28Q13084 256 aaKnown RBP4.81□□□□□ -1.64
CCDC39-204ENST00000476379 AQP6Q13520 282 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF846Q147U1 533 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 LASP1Q14847 261 aaKnown RBP4.81□□□□□ -1.64
CCDC39-204ENST00000476379 CLCA4Q14CN2 919 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 EXOC3L2Q2M3D2 409 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 SLC36A3Q495N2 470 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 CRTC2Q53ET0 693 aaPredicted RBP4.81□□□□□ -1.64
CCDC39-204ENST00000476379 TCEAL5Q5H9L2 206 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 TRIQKQ629K1 86 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 FRG2Q64ET8 278 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 CNKSR3Q6P9H4 555 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF773Q6PK81 442 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 DCDC5Q6ZRR9 648 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 NCCRP1Q6ZVX7 275 aaPredicted RBP4.81□□□□□ -1.64
CCDC39-204ENST00000476379 USP30Q70CQ3 517 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 DGLUCYQ7Z3D6 616 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 CHPFQ8IZ52 775 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 DEFB123Q8N688 67 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 SETD9Q8NE22 299 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 C19orf18Q8NEA5 215 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 RAB2BQ8WUD1 216 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF641Q96N77 438 aaPredicted RBP4.81□□□□□ -1.64
CCDC39-204ENST00000476379 FRG2BQ96QU4 278 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 P2RY13Q9BPV8 354 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 WACQ9BTA9 647 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 ACPTQ9BZG2 426 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 AMBRA1Q9C0C7 1298 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 IL1RAPQ9NPH3 570 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 MCUBQ9NWR8 336 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 MKS1Q9NXB0 559 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 VNN3Q9NY84 501 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 PCDHGA11Q9Y5H2 935 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 KCNE2Q9Y6J6 123 aa4.81□□□□□ -1.64
CCDC39-204ENST00000476379 SH3PXD2BA1X283 911 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ISM1B1AKI9 464 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ABCB7O75027 752 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CBFA2T3O75081 653 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 WBP4O75554 376 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 NCR1O76036 304 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 SEMA3DO95025 777 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 GADD45GO95257 159 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 GNRH1P01148 92 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ESR1P03372 595 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ATP5BP06576 529 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 MMP2P08253 660 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 HOXD8P13378 290 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 POLR2EP19388 210 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 SLC26A3P40879 764 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CCR2P41597 374 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 SSR2P43308 183 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CTSCP53634 463 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 OLR1P78380 273 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ARF5P84085 180 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 LMAN2Q12907 356 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PIN1Q13526 163 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 SF3B4Q15427 424 aaKnown RBP eCLIP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 SMAD2Q15796 467 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 HIST2H2ACQ16777 129 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF829Q3KNS6 432 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 LY6G5CQ5SRR4 150 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 HIST2H2AA3Q6FI13 130 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 IL20RBQ6UXL0 311 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CHST9Q7L1S5 443 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 SPATA19Q7Z5L4 167 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 GLCCI1Q86VQ1 547 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PROSER1Q86XN7 944 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms