RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PKD2L2Q9NZM6 624 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 VPS18Q9P253 973 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 R4GN57 208 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 HCFC1P51610 2035 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 TRBV5-5A0A0J9YX44 114 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 SHISA7A6NL88 538 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 C15orf61A6NNL5 157 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 MPTX1A8MV57 137 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 C2CD4DB7Z1M9 353 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 PRSS46E5RG02 174 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 F8VVB4 439 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 F8VWA3 439 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 O00370 1275 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 FPGTO14772 594 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 FMO6PO60774 539 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 GLRA3O75311 464 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 NME6O75414 186 aaPredicted RBP2.53□□□□□ -2
CCDC88A-212ENST00000474059 F3P13726 295 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 DUTP33316 252 aaKnown RBP2.53□□□□□ -2
CCDC88A-212ENST00000474059 LEPRP48357 1165 aaKnown RBP2.53□□□□□ -2
CCDC88A-212ENST00000474059 CACNG1Q06432 222 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 EXT1Q16394 746 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 MOGAT2Q3SYC2 334 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 CCDC158Q5M9N0 1113 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 KRTAP5-7Q6L8G8 165 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 CASC4Q6P4E1 433 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 IYDQ6PHW0 289 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 PRSS55Q6UWB4 352 aaPredicted RBP2.53□□□□□ -2
CCDC88A-212ENST00000474059 CHMP1BQ7LBR1 199 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 TUSC5Q8IXB3 177 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 C4orf19Q8IY42 314 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 SYCP3Q8IZU3 236 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 KIRREL3Q8IZU9 778 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 FGFRL1Q8N441 504 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.53□□□□□ -2
CCDC88A-212ENST00000474059 CCDC63Q8NA47 563 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 OR7A2PQ8NGA2 310 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 NCOA7Q8NI08 942 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 GRK7Q8WTQ7 553 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 SMAP2Q8WU79 429 aaPredicted RBP2.53□□□□□ -2
CCDC88A-212ENST00000474059 C4orf45Q96LM5 186 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 AK8Q96MA6 479 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 KLHL5Q96PQ7 755 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 FUT8Q9BYC5 575 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 PUS3Q9BZE2 481 aaKnown RBP2.53□□□□□ -2
CCDC88A-212ENST00000474059 DNAI2Q9GZS0 605 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 THAP2Q9H0W7 228 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 SDCBP2Q9H190 292 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 MMADHCQ9H3L0 296 aaPredicted RBP2.53□□□□□ -2
CCDC88A-212ENST00000474059 TMEM206Q9H813 350 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 MED20Q9H944 212 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 TUFT1Q9NNX1 390 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 RAB9BQ9NP90 201 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 C19orf25Q9UFG5 118 aaPredicted RBP2.53□□□□□ -2
CCDC88A-212ENST00000474059 LIPT1Q9Y234 373 aa2.53□□□□□ -2
CCDC88A-212ENST00000474059 IL16Q14005 1332 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 SDR42E2A6NKP2 422 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 SNURFLB1AK76 121 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 C17orf105B2RV13 164 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 TMEM150CB9EJG8 249 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF263O14978 683 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 CTDSPLO15194 276 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 CDK2AP2O75956 126 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 MOCS2O96007 188 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 C9P02748 559 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 EEF2P13639 858 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 IL4RP24394 825 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 OAS2P29728 719 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 CCND3P30281 292 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 SSTR1P30872 391 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 SFTPDP35247 375 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 ST8SIA6P61647 398 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 FOLH1Q04609 750 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 IL10RBQ08334 325 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 C17orf67Q0P5P2 114 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 OPCMLQ14982 345 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 C15orf32Q32M92 178 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 FAM46CQ5VWP2 391 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 PODNL1Q6PEZ8 512 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 TMEM207Q6UWW9 146 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 PP632Q6XCG6 107 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 G2E3Q7L622 706 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 CCDC91Q7Z6B0 441 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 PIGWQ7Z7B1 504 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 PHLDB2Q86SQ0 1253 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 MEX3DQ86XN8 651 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 MARCH9Q86YJ5 346 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 CREBRFQ8IUR6 639 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 CROCCP3Q8IVE0 287 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 CCDC170Q8IYT3 715 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 NUP93Q8N1F7 819 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 LRTM2Q8N967 370 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 OR7G3Q8NG95 312 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC26A7Q8TE54 656 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 AFAP1L1Q8TED9 768 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 PIK3R3Q92569 461 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 PTP4A1Q93096 173 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 TEKT1Q969V4 418 aa2.52□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC45A3Q96JT2 553 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms