RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 TEX264Q9Y6I9 313 aa16.5■□□□□ 0.23
COL7A1-206ENST00000466591 PRRC2CQ9Y520 2896 aaKnown RBP16.49■□□□□ 0.23
COL7A1-206ENST00000466591 PRSS44E7EML9 344 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 PRMT3O60678 531 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 WDR47O94967 919 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 SEC31AO94979 1220 aaKnown RBP16.49■□□□□ 0.23
COL7A1-206ENST00000466591 TSPAN12O95859 305 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 STSP08842 583 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 HNMTP50135 292 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 PMP22Q01453 160 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 ILF2Q12905 390 aaKnown RBP16.49■□□□□ 0.23
COL7A1-206ENST00000466591 ZNF460Q14592 562 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 OR1C1Q15619 314 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 ZRSR2Q15696 482 aaKnown RBP16.49■□□□□ 0.23
COL7A1-206ENST00000466591 MTFR2Q6P444 385 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 CRLF3Q8IUI8 442 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 PLPP5Q8NEB5 264 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 PYROXD1Q8WU10 500 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 TSLPQ969D9 159 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 MOCOSQ96EN8 888 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 TSPAN17Q96FV3 270 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 PDLIM5Q96HC4 596 aaKnown RBP16.49■□□□□ 0.23
COL7A1-206ENST00000466591 OR4K3Q96R72 315 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 KRT12Q99456 494 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 KCNF1Q9H3M0 494 aa16.49■□□□□ 0.23
COL7A1-206ENST00000466591 A0A088AWK7 358 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 ARHGAP10A1A4S6 786 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 NCF1BA6NI72 391 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 GABRR3A8MPY1 467 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 NCF1CA8MVU1 366 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 CDC7O00311 574 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 CCL21O00585 134 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 S100BP04271 92 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 ESRRAP11474 423 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 RNH1P13489 461 aaKnown RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 NCF1P14598 390 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 GNAZP19086 355 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 ZNF10P21506 573 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 HPDP32754 393 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 SCTRP47872 440 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 EFNA3P52797 238 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 STXBP1P61764 594 aaKnown RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 SNRPNP63162 240 aaKnown RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 RHAGQ02094 409 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 ALDH6A1Q02252 535 aaKnown RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 TUBA3CQ13748 450 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 USP10Q14694 798 aaKnown RBP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.48■□□□□ 0.23
COL7A1-206ENST00000466591 TOR1AIP1Q5JTV8 583 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 STEAP4Q687X5 459 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 TUBA3EQ6PEY2 450 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 NXPE4Q6UWF7 544 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 SBSNQ6UWP8 590 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 OR4K1Q8NGD4 311 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 NT5CQ8TCD5 201 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 TMEM125Q96AQ2 219 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 WWOXQ9NZC7 414 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 SNX24Q9Y343 169 aa16.48■□□□□ 0.23
COL7A1-206ENST00000466591 SCN3AQ9NY46 2000 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 USP27XA6NNY8 438 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 CLGNO14967 610 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 B3GALT4O96024 378 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 IVDP26440 423 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 TDGF1P3P51864 188 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 SLC26A5P58743 744 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 REEP5Q00765 189 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 SRSF11Q05519 484 aaKnown RBP16.47■□□□□ 0.23
COL7A1-206ENST00000466591 MAPKAPK3Q16644 382 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 ZC3HC1Q86WB0 502 aaKnown RBP16.47■□□□□ 0.23
COL7A1-206ENST00000466591 CREG2Q8IUH2 290 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 SLC34A3Q8N130 599 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 KRT78Q8N1N4 520 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 TTLQ8NG68 377 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 RHOJQ9H4E5 214 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 CDCP1Q9H5V8 836 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 CNOT10Q9H9A5 744 aaKnown RBP16.47■□□□□ 0.23
COL7A1-206ENST00000466591 RNF14Q9UBS8 474 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 OARD1Q9Y530 152 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 PSAT1Q9Y617 370 aa16.47■□□□□ 0.23
COL7A1-206ENST00000466591 CNTRLQ7Z7A1 2325 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 UTP20O75691 2785 aaKnown RBP16.46■□□□□ 0.23
COL7A1-206ENST00000466591 HIVEP3Q5T1R4 2406 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 A8MUA0 341 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 FCHO1O14526 889 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 ST13P50502 369 aaKnown RBP16.46■□□□□ 0.23
COL7A1-206ENST00000466591 TAS2R39P59534 338 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 FRG1Q14331 258 aaKnown RBP16.46■□□□□ 0.23
COL7A1-206ENST00000466591 TSNQ15631 228 aaKnown RBP16.46■□□□□ 0.23
COL7A1-206ENST00000466591 SPINK14Q6IE38 97 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 RPS19BP1Q86WX3 136 aaKnown RBP16.46■□□□□ 0.23
COL7A1-206ENST00000466591 TCAIMQ8N3R3 496 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 AFAP1L2Q8N4X5 818 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 AMER2Q8N7J2 671 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 SNX31Q8N9S9 440 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 UTP15Q8TED0 518 aaKnown RBP16.46■□□□□ 0.23
COL7A1-206ENST00000466591 ANKRD7Q92527 254 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 SARGQ9BW04 601 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 CAPS2Q9BXY5 557 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 DEFB126Q9BYW3 111 aa16.46■□□□□ 0.23
COL7A1-206ENST00000466591 UNKQ9C0B0 810 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms