RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 COMMD3Q9UBI1 195 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 TLR6Q9Y2C9 796 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 PCDHGB3Q9Y5G1 929 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 LTBP4Q8N2S1 1624 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 A0A075B6Q4 140 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 A0A0G2JLL6 359 aaPredicted RBP11.27□□□□□ -0.61
CPSF3-202ENST00000460593 CSO75390 466 aaKnown RBP11.27□□□□□ -0.61
CPSF3-202ENST00000460593 COX7A2P14406 83 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 ALAS2P22557 587 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 CRYBB2P43320 205 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 ATN1P54259 1190 aaPredicted RBP11.27□□□□□ -0.61
CPSF3-202ENST00000460593 TWF1Q12792 350 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 ZNF267Q14586 743 aaPredicted RBP11.27□□□□□ -0.61
CPSF3-202ENST00000460593 C10orf120Q5SQS8 335 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 ARMC12Q5T9G4 340 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 ADNP2Q6IQ32 1131 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 PLET1Q6UQ28 207 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 PRRT2Q7Z6L0 340 aaPredicted RBP11.27□□□□□ -0.61
CPSF3-202ENST00000460593 SERPINA11Q86U17 422 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 ADGRG2Q8IZP9 1017 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 LRRC20Q8TCA0 184 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 NACC2Q96BF6 587 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 ZIC5Q96T25 663 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 TPT1P8Q9HAU6 139 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 FAM105AQ9NUU6 356 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 FAM8A1Q9UBU6 413 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 RABL2BQ9UNT1 228 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 POLHQ9Y253 713 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 HCN4Q9Y3Q4 1203 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 DOCK4Q8N1I0 1966 aa11.27□□□□□ -0.61
CPSF3-202ENST00000460593 E9PQ18 207 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 CBX4O00257 560 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 CCNB2O95067 398 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ZNF865P0CJ78 1059 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ODC1P11926 461 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ITPKAP23677 461 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 HOXD9P28356 352 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ERP29P30040 261 aaKnown RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 WNT3P56703 355 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 RPS24P62847 133 aaKnown RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 OLR1P78380 273 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 GAB1Q13480 694 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 GLYR1Q49A26 553 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 COX20Q5RI15 118 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ATXN7L2Q5T6C5 722 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 SYT12Q8IV01 421 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 FBXL6Q8N531 539 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 UPRTQ96BW1 309 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 TBC1D20Q96BZ9 403 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 FAM129BQ96TA1 746 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 PKMYT1Q99640 499 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ACBD6Q9BR61 282 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 TAPBPLQ9BX59 468 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 FAM126AQ9BYI3 521 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 C3orf14Q9HBI5 128 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 CCDC88CQ9P219 2028 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 USP34Q70CQ2 3546 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 SMIM35A0A1B0GVV1 85 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 I3L521 148 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ALPPP05187 535 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 HBQ1P09105 142 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ATF4P18848 351 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 RPS12P25398 132 aaKnown RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 MLLT3P42568 568 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 CSNK2BP67870 215 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 TARDBPQ13148 414 aaKnown RBP eCLIP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 LRRC32Q14392 662 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 POU4F3Q15319 338 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 DUOXA1Q1HG43 343 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 TTLL9Q3SXZ7 439 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ESCO2Q56NI9 601 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 METTL23Q86XA0 190 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 DENND1CQ8IV53 801 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 HOMEZQ8IX15 550 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 OR8H3Q8N146 312 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ZFP41Q8N8Y5 198 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 C1orf74Q96LT6 269 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 EPYCQ99645 322 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 TCF25Q9BQ70 676 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ACSL6Q9UKU0 697 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 PLK4O00444 970 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 INSIG1O15503 277 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 PRAMEF4O60810 478 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 NCR1O76036 304 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ASAH1Q13510 395 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ZNF792Q3KQV3 632 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 PRAMEF9Q5VWM5 478 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 FAM180BQ6P0A1 224 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 SERPINA9Q86WD7 417 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 USP7Q93009 1102 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 ZBED6CLQ96FA7 236 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 MSANTD3Q96H12 275 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 MTERF1Q99551 399 aaKnown RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 POLR2J2Q9GZM3 115 aaKnown RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 TRIM45Q9H8W5 580 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-202ENST00000460593 PDFQ9HBH1 243 aa11.26□□□□□ -0.61
CPSF3-202ENST00000460593 A0A0C4DFX4 3053 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 BRWD3Q6RI45 1802 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 PATJQ8NI35 1801 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 RRN3P2A6NIE6 340 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms