RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 SHKBP1Q8TBC3 707 aa11.67□□□□□ -0.54
UBR4-205ENST00000417040 MAFIPQ8WZ33 124 aa11.67□□□□□ -0.54
UBR4-205ENST00000417040 OR2B2Q9GZK3 357 aa11.67□□□□□ -0.54
UBR4-205ENST00000417040 XKR8Q9H6D3 395 aa11.67□□□□□ -0.54
UBR4-205ENST00000417040 RNF121Q9H920 327 aa11.67□□□□□ -0.54
UBR4-205ENST00000417040 FAM118AQ9NWS6 357 aa11.67□□□□□ -0.54
UBR4-205ENST00000417040 PTBP2Q9UKA9 531 aaKnown RBP11.67□□□□□ -0.54
UBR4-205ENST00000417040 COQ4Q9Y3A0 265 aa11.67□□□□□ -0.54
UBR4-205ENST00000417040 KAT6AQ92794 2004 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 E7EQ34 232 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 OR2B3O76000 313 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 OXSR1O95747 527 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 HLA-DPB1P04440 258 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 MAGEA11P43364 429 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 PIGGQ5H8A4 983 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 TMEM145Q8NBT3 493 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 NUS1Q96E22 293 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 HAPLN3Q96S86 360 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 SEC61A2Q9H9S3 476 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 TLL1O43897 1013 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 PEPDP12955 493 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 ACP5P13686 325 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 ZNF14P17017 642 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 CXCR1P25024 350 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 VIPR1P32241 457 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 CTSOP43234 321 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 AP1S1P61966 158 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 SP2Q02086 613 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 MAPK14Q16539 360 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 C18orf21Q32NC0 220 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 UBE2UQ5VVX9 321 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 FBXL22Q6P050 247 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 LHFPL3Q86UP9 236 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 C2CD4AQ8NCU7 369 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 FCAMRQ8WWV6 532 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 MMP28Q9H239 520 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 RNF39Q9H2S5 420 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 MMP27Q9H306 513 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 ZNF226Q9NYT6 803 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 TAS2R10Q9NYW0 307 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 DEC1Q9P2X7 70 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 NID2Q14112 1375 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 CLCA1A8K7I4 914 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 HOXA10P31260 410 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 RPP38P78345 283 aaKnown RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 KCNC4Q03721 635 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 NUP54Q7Z3B4 507 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 TMEM199Q8N511 208 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 PSD4Q8NDX1 1056 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 PLD4Q96BZ4 506 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 S100A16Q96FQ6 103 aaKnown RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 SIGLEC10Q96LC7 697 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 ZNF649Q9BS31 505 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 MINDY3Q9H8M7 445 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 GPR83Q9NYM4 423 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 HIF3AQ9Y2N7 669 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 IRAK2O43187 625 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 APOC3P02656 99 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 APODP05090 189 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 ATP1B2P14415 290 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 ZNF16P17020 682 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 GADD45AP24522 165 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 DGKGP49619 791 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 MMP14P50281 582 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 DPY19L1Q2PZI1 675 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 SPIN4Q56A73 249 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 SHFQ7M4L6 423 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 TMEM17Q86X19 198 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 HDDC3Q8N4P3 179 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 BOLLQ8N9W6 283 aaKnown RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 LGALS12Q96DT0 336 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 ZDHHC3Q9NYG2 299 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 IL36AQ9UHA7 158 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 MITFO75030 526 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 BMXP51813 675 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 E2F1Q01094 437 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 MAD2L1BPQ15013 274 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 PRAMEF14Q5SWL7 426 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 PRAMEF13Q5VWM6 474 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 VITQ6UXI7 678 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 FANK1Q8TC84 345 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 DOK4Q8TEW6 326 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 JPH3Q8WXH2 748 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 KLRG1Q96E93 195 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 MRIQ9BWK5 157 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 GPR88Q9GZN0 384 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 ZBTB20Q9HC78 741 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 MOCS1Q9NZB8 636 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 TMEM9Q9P0T7 183 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 MGAT4CQ9UBM8 478 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 FBXO9Q9UK97 447 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 GJD2Q9UKL4 321 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 TMEM98Q9Y2Y6 226 aa11.66□□□□□ -0.54
UBR4-205ENST00000417040 HEMK1Q9Y5R4 338 aaPredicted RBP11.66□□□□□ -0.54
UBR4-205ENST00000417040 SH3PXD2BA1X283 911 aa11.65□□□□□ -0.54
UBR4-205ENST00000417040 ZNF670-ZNF695F2Z2N8 137 aa11.65□□□□□ -0.54
UBR4-205ENST00000417040 SDHDO14521 159 aa11.65□□□□□ -0.54
UBR4-205ENST00000417040 PDYNP01213 254 aa11.65□□□□□ -0.54
UBR4-205ENST00000417040 ALDOAP04075 364 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms