RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 IMMP1LQ96LU5 166 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 ZNF354BQ96LW1 612 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 KCNC2Q96PR1 638 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 SERINC2Q96SA4 455 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 LPAR4Q99677 370 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 MRPL57Q9BQC6 102 aaKnown RBP6.05□□□□□ -1.44
USP54-202ENST00000413442 NTMT1Q9BV86 223 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 YIPF2Q9BWQ6 316 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 SLC29A3Q9BZD2 475 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 SEMA4CQ9C0C4 833 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 CDC42EP4Q9H3Q1 356 aaKnown RBP6.05□□□□□ -1.44
USP54-202ENST00000413442 ZNF552Q9H707 407 aaPredicted RBP6.05□□□□□ -1.44
USP54-202ENST00000413442 SLAMF7Q9NQ25 335 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 AGPAT4Q9NRZ5 378 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 NMRK1Q9NWW6 199 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 WWOXQ9NZC7 414 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 AHSPQ9NZD4 102 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 NINJ2Q9NZG7 142 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 ABI3Q9P2A4 366 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 MKL2Q9ULH7 1088 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 B3GNT3Q9Y2A9 372 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 TP53TG5Q9Y2B4 290 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 MRPS2Q9Y399 296 aaKnown RBP6.05□□□□□ -1.44
USP54-202ENST00000413442 ANGPTL3Q9Y5C1 460 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 ZFHX4Q86UP3 3567 aa6.05□□□□□ -1.44
USP54-202ENST00000413442 SCN2AQ99250 2005 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 IGHV1-45A0A0A0MS14 117 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 DYTNA2CJ06 578 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 CCDC151A5D8V7 595 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 LRIT2A6NDA9 550 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 NPEPPSL1A6NEC2 478 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 H0YIV9 168 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 FOXE1O00358 373 aaPredicted RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 TAPBPO15533 448 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 PHGDHO43175 533 aaKnown RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 CNOT3O75175 753 aaKnown RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 SMIM24O75264 130 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 GUCY1B2O75343 617 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 VPS4BO75351 444 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 KLHL18O94889 574 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 MLYCDO95822 493 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 CTSBP07858 339 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 MTHFD2P13995 350 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 TAC1P20366 129 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 ITGA3P26006 1051 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 PPP2R1BP30154 601 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 TLX1P31314 330 aaPredicted RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 XCR1P46094 333 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 CCT5P48643 541 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 MTTPP55157 894 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 TAS2R50P59544 299 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 YBX1P67809 324 aaKnown RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 NFKB2Q00653 900 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 ACTN3Q08043 901 aaPredicted RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 CHAF1BQ13112 559 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 CHIT1Q13231 466 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 MFAP5Q13361 173 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 CUL3Q13618 768 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 COL9A2Q14055 689 aaPredicted RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 SERTAD2Q14140 314 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 DOC2AQ14183 400 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 SETDB1Q15047 1291 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 TLR1Q15399 786 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 TRADDQ15628 312 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 NSDHLQ15738 373 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 AP5B1Q2VPB7 878 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 XKR6Q5GH73 641 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 ATP1A1-AS1Q5TC04 95 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 MROH9Q5TGP6 573 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 GRHL2Q6ISB3 625 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 Q6ZS92 163 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 CAPN12Q6ZSI9 719 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 TDRPQ86YL5 185 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 SLC22A9Q8IVM8 553 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 IQCKQ8N0W5 287 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 EFCAB3Q8N7B9 438 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 KCT2Q8NC54 265 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 NOA1Q8NC60 698 aaKnown RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 OR9A4Q8NGU2 314 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 DNAJB8Q8NHS0 232 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 SUN3Q8TAQ9 357 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 UTP15Q8TED0 518 aaKnown RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 TRPC4APQ8TEL6 797 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 NXNL1Q96CM4 212 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 RUFY1Q96T51 708 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 C1QTNF3Q9BXJ4 246 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 TRIM55Q9BYV6 548 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 REXO4Q9GZR2 422 aaKnown RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 MRPL46Q9H2W6 279 aaKnown RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 CLMPQ9H6B4 373 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 SOX17Q9H6I2 414 aaPredicted RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 ALG9Q9H6U8 611 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 CAB39LQ9H9S4 337 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 LYRM4Q9HD34 91 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 ZNF71Q9NQZ8 489 aaPredicted RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 SNX15Q9NRS6 342 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 TSR3Q9UJK0 312 aaKnown RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 NFU1Q9UMS0 254 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 VPS4AQ9UN37 437 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 PPIEQ9UNP9 301 aaKnown RBP6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms