RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 MOGQ16653 247 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 HIST2H2ACQ16777 129 aaPredicted RBP20.92■□□□□ 0.94
SHMT1-202ENST00000352886 IER5LQ5T953 404 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 KIAA1614Q5VZ46 1190 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 HIST2H2AA3Q6FI13 130 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 FAHD1Q6P587 224 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 WDR48Q8TAF3 677 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 SLC5A11Q8WWX8 675 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 CIDECQ96AQ7 238 aaPredicted RBP20.92■□□□□ 0.94
SHMT1-202ENST00000352886 RAD9AQ99638 391 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 CDH23Q9H251 3354 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 RAD21L1Q9H4I0 556 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 ENPP5Q9UJA9 477 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 MAGEB3O15480 346 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 TLL1O43897 1013 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 LZTS3O60299 673 aaPredicted RBP20.91■□□□□ 0.94
SHMT1-202ENST00000352886 BCAS1O75363 584 aaPredicted RBP20.91■□□□□ 0.94
SHMT1-202ENST00000352886 RRM2P31350 389 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 SLC6A11P48066 632 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 GJA8P48165 433 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 SPCS2Q15005 226 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 NPTX1Q15818 432 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 C9orf64Q5T6V5 341 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 TSPYL5Q86VY4 417 aaPredicted RBP20.91■□□□□ 0.94
SHMT1-202ENST00000352886 LRRC56Q8IYG6 542 aaPredicted RBP20.91■□□□□ 0.94
SHMT1-202ENST00000352886 SPPL2AQ8TCT8 520 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 OR8D1Q8WZ84 308 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 ZFYVE19Q96K21 471 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 EPYCQ99645 322 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 SLC35A5Q9BS91 424 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 DUSP21Q9H596 190 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 TRIM39Q9HCM9 518 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 ITM2CQ9NQX7 267 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 ATAD3AQ9NVI7 634 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 SCN3BQ9NY72 215 aa20.91■□□□□ 0.94
SHMT1-202ENST00000352886 POP7O75817 140 aaKnown RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 OPN1SWP03999 348 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 FURINP09958 794 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 ADRB3P13945 408 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 CXCR4P61073 352 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 SMN1Q16637 294 aaKnown RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 GOT1L1Q8NHS2 421 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 SP7Q8TDD2 431 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 RHNO1Q9BSD3 238 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 EHD1Q9H4M9 534 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 CCDC177Q9NQR7 707 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 TBC1D23Q9NUY8 699 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 PADI2Q9Y2J8 665 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 NUP210Q8TEM1 1887 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 DPM1O60762 260 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 IMPDH2P12268 514 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 BMXP51813 675 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 SELENOWP63302 87 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 C2orf80Q0P641 193 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 CAMK2GQ13555 558 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 CAMK1Q14012 370 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 MAD2L1BPQ15013 274 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 C10orf62Q5T681 223 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 NXPE4Q6UWF7 544 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 ANKRD13BQ86YJ7 626 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 ETFBKMTQ8IXQ9 262 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF740Q8NDX6 193 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 C16orf78Q8WTQ4 265 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 ABTB1Q969K4 478 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF707Q96C28 371 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-202ENST00000352886 PPCDCQ96CD2 204 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 RASSF1Q9NS23 344 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 ACSL6Q9UKU0 697 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 PCDHGA10Q9Y5H3 936 aa20.9■□□□□ 0.94
SHMT1-202ENST00000352886 AXIN1O15169 862 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 PAPLNO95428 1278 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 CD6P30203 668 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 MAP2K4P45985 399 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 TAS2R50P59544 299 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 NPRL3Q12980 569 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 HNRNPA1L2Q32P51 320 aaKnown RBP20.89■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF765Q7L2R6 523 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 CCDC71Q8IV32 467 aaPredicted RBP20.89■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF540Q8NDQ6 660 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 TMIEQ8NEW7 156 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 LZICQ8WZA0 190 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 RORBQ92753 470 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 ERLEC1Q96DZ1 483 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 SPASTQ9UBP0 616 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 AP1M2Q9Y6Q5 423 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 DGKBQ9Y6T7 804 aa20.89■□□□□ 0.94
SHMT1-202ENST00000352886 CLPXO76031 633 aa20.89■□□□□ 0.93
SHMT1-202ENST00000352886 TNFRSF1BP20333 461 aa20.89■□□□□ 0.93
SHMT1-202ENST00000352886 MLLT10P55197 1068 aa20.89■□□□□ 0.93
SHMT1-202ENST00000352886 C21orf59P57076 290 aa20.89■□□□□ 0.93
SHMT1-202ENST00000352886 RPP38P78345 283 aaKnown RBP20.89■□□□□ 0.93
SHMT1-202ENST00000352886 CTF1Q16619 201 aa20.89■□□□□ 0.93
SHMT1-202ENST00000352886 MPEG1Q2M385 716 aa20.89■□□□□ 0.93
SHMT1-202ENST00000352886 TSEN54Q7Z6J9 526 aaKnown RBP20.89■□□□□ 0.93
SHMT1-202ENST00000352886 UBE2FQ969M7 185 aa20.89■□□□□ 0.93
SHMT1-202ENST00000352886 LINC00615Q96LM1 132 aaPredicted RBP20.89■□□□□ 0.93
SHMT1-202ENST00000352886 IL17FQ96PD4 163 aa20.89■□□□□ 0.93
SHMT1-202ENST00000352886 PRKAB1Q9Y478 270 aa20.89■□□□□ 0.93
SHMT1-202ENST00000352886 PCDHGB3Q9Y5G1 929 aa20.89■□□□□ 0.93
SHMT1-202ENST00000352886 EDDM13A0A1B0GTR0 161 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms