RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 NAGSQ8N159 534 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 CPA6Q8N4T0 437 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 L3MBTL4Q8NA19 623 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 ATG16L2Q8NAA4 619 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 OR8J3Q8NGG0 315 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 KCNH6Q9H252 994 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 AMBNQ9NP70 447 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 CLDND1Q9NY35 253 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 TESMINQ9Y4I5 508 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 NEUROG3Q9Y4Z2 214 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 ANKDD1BA6NHY2 528 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 H0Y8X5 98 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 HOXC11O43248 304 aaPredicted RBP13.35□□□□□ -0.27
TRIM4-201ENST00000349062 ERN1O75460 977 aaKnown RBP13.35□□□□□ -0.27
TRIM4-201ENST00000349062 PRKRAO75569 313 aaKnown RBP13.35□□□□□ -0.27
TRIM4-201ENST00000349062 RASAL1O95294 804 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 PIGAP37287 484 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 PNLIPRP1P54315 467 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 SP140Q13342 867 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 GAB1Q13480 694 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 CST6Q15828 149 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 DUOXA1Q1HG43 343 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 COX20Q5RI15 118 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 CCDC81Q6ZN84 652 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 SLCO4C1Q6ZQN7 724 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 PTRH1Q86Y79 214 aaKnown RBP13.35□□□□□ -0.27
TRIM4-201ENST00000349062 GPR65Q8IYL9 337 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 VPS37AQ8NEZ2 397 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 TNIP2Q8NFZ5 429 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 SLC5A11Q8WWX8 675 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 EPS8L2Q9H6S3 715 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 SFXN1Q9H9B4 322 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 RWDD3Q9Y3V2 267 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 AGRPO00253 132 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 APODP05090 189 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 THRBP10828 461 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 SHMT2P34897 504 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 TUBA4AP68366 448 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 UBE3AQ05086 875 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 CPPED1Q9BRF8 314 aaPredicted RBP13.35□□□□□ -0.27
TRIM4-201ENST00000349062 IFT80Q9P2H3 777 aaPredicted RBP13.35□□□□□ -0.27
TRIM4-201ENST00000349062 RHCGQ9UBD6 479 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 WDR37Q9Y2I8 494 aa13.35□□□□□ -0.27
TRIM4-201ENST00000349062 SERPINB7O75635 380 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 IL3P08700 152 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 HOXA9P31269 272 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 CAPGP40121 348 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 TFF2Q03403 129 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 DNASE1L3Q13609 305 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 GAB4Q2WGN9 574 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 ZNF542PQ5EBM4 170 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 LIPJQ5W064 366 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 TMEM53Q6P2H8 277 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 TMIGD1Q6UXZ0 262 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 DGLUCYQ7Z3D6 616 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 BTLAQ7Z6A9 289 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 RAB8BQ92930 207 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 UCN3Q969E3 161 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 TAMM41Q96BW9 452 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 PPCDCQ96CD2 204 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 YIPF4Q9BSR8 244 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 WDR26Q9H7D7 661 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 POLE4Q9NR33 117 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 VNN3Q9NY84 501 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 HCN2Q9UL51 889 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 SAMHD1Q9Y3Z3 626 aaKnown RBP13.34□□□□□ -0.27
TRIM4-201ENST00000349062 VPS13AQ96RL7 3174 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 DYTNA2CJ06 578 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 AGXTP21549 392 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 HOXD12P35452 270 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 DCDC1P59894 354 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 CDK3Q00526 305 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 DAG1Q14118 895 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 SPDYE7PQ495Y7 208 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 CYBRD1Q53TN4 286 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 ATAT1Q5SQI0 421 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 CCNYL2Q5T2Q4 361 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 C17orf64Q86WR6 236 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 EID3Q8N140 333 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 WDR20Q8TBZ3 569 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 PHOSPHO2Q8TCD6 241 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 DKK3Q9UBP4 350 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 RAB23Q9ULC3 237 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 A0A096LPI6 279 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 A0A1W2PQU0 124 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 TMEM221A6NGB7 291 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 QSOX1O00391 747 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 NPC1O15118 1278 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 XPNPEP2O43895 674 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 ERAL1O75616 437 aaKnown RBP13.34□□□□□ -0.27
TRIM4-201ENST00000349062 C1GALT1C1LP0DN25 315 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 HOXB3P14651 431 aaPredicted RBP13.34□□□□□ -0.27
TRIM4-201ENST00000349062 HBA1P69905 142 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 KCNAB2Q13303 367 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 Q6ZPB1 254 aaPredicted RBP13.34□□□□□ -0.27
TRIM4-201ENST00000349062 FAM129CQ86XR2 697 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 UBE2FQ969M7 185 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 LRIG1Q96JA1 1093 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 HSH2DQ96JZ2 352 aa13.34□□□□□ -0.27
TRIM4-201ENST00000349062 TRMT61BQ9BVS5 477 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms