RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 FOSL2P15408 326 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 EEF1B2P24534 225 aaKnown RBP12.32□□□□□ -0.44
CLK3-201ENST00000345005 RPL10P27635 214 aaKnown RBP12.32□□□□□ -0.44
CLK3-201ENST00000345005 AKT2P31751 481 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 BMXP51813 675 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 DAG1Q14118 895 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 NR1D2Q14995 579 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 INAQ16352 499 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 CYP2A13Q16696 494 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 USP39Q53GS9 565 aaKnown RBP12.32□□□□□ -0.44
CLK3-201ENST00000345005 FGD3Q5JSP0 725 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 MED27Q6P2C8 311 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 LCTLQ6UWM7 567 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 C8orf59Q8N0T1 100 aaPredicted RBP12.32□□□□□ -0.44
CLK3-201ENST00000345005 SVOPLQ8N434 492 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 RAB42Q8N4Z0 105 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 VPS33AQ96AX1 596 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 PHF12Q96QT6 1004 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 PCBD2Q9H0N5 130 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 ACTL8Q9H568 366 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 VPS29Q9UBQ0 182 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 DUSP12Q9UNI6 340 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 PRSS38A1L453 326 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 CHURC1-FNTBB4DL54 471 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 IGLV3-19P01714 112 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 THRBP10828 461 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 HTR1BP28222 390 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 CTBSQ01459 385 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 CHRNB3Q05901 458 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 IL18R1Q13478 541 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 LRRC32Q14392 662 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 NFATC4Q14934 902 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 NDUFA5Q16718 116 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 RFX4Q33E94 735 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 PUS10Q3MIT2 529 aaKnown RBP12.32□□□□□ -0.44
CLK3-201ENST00000345005 PRAMEF14Q5SWL7 426 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 PRAMEF13Q5VWM6 474 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 NXPE4Q6UWF7 544 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 SYT13Q7L8C5 426 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 TMPRSS11BQ86T26 416 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 FLCNQ8NFG4 579 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 OR7G3Q8NG95 312 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 SLC5A11Q8WWX8 675 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 BIRC7Q96CA5 298 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 FBXL20Q96IG2 436 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 C12orf66Q96MD2 445 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 WDR92Q96MX6 357 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 FERD3LQ96RJ6 166 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 INSM2Q96T92 566 aaPredicted RBP12.32□□□□□ -0.44
CLK3-201ENST00000345005 CHID1Q9BWS9 393 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 OSBPL10Q9BXB5 764 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 CD93Q9NPY3 652 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 SPATA6Q9NWH7 488 aaPredicted RBP12.32□□□□□ -0.44
CLK3-201ENST00000345005 KCNK6Q9Y257 313 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 MRPS17Q9Y2R5 130 aaKnown RBP12.32□□□□□ -0.44
CLK3-201ENST00000345005 HS3ST3A1Q9Y663 406 aa12.32□□□□□ -0.44
CLK3-201ENST00000345005 CFAP20Q9Y6A4 193 aaKnown RBP12.32□□□□□ -0.44
CLK3-201ENST00000345005 FANCMQ8IYD8 2048 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 FAM149AA5PLN7 773 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 ASPDHA6ND91 283 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 PRR19A6NJB7 356 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 CLDN25C9JDP6 229 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 TOR1BO14657 336 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 TNFRSF10CO14798 259 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 LATO43561 262 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 TPST1O60507 370 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 NTRK1P04629 796 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 IL6P05231 212 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 AMD1P17707 334 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 OXTRP30559 389 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 SERPINB10P48595 397 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 ARSFP54793 590 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 CLDN8P56748 225 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 CLDN2P57739 230 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 YPEL5P62699 121 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 BNIP3Q12983 259 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 PTGR1Q14914 329 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 NEDD8Q15843 81 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 UAP1L1Q3KQV9 507 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 TIGD2Q4W5G0 525 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 SUSD1Q6UWL2 747 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 ENPP7Q6UWV6 458 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 Q6ZS52 159 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 ZDHHC13Q8IUH4 622 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 RIMKLAQ8IXN7 391 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 OR52E4Q8NGH9 312 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 MAFAQ8NHW3 353 aaPredicted RBP12.31□□□□□ -0.44
CLK3-201ENST00000345005 SMPDL3AQ92484 453 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 UBE2E3Q969T4 207 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 FCRL1Q96LA6 429 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 BMFQ96LC9 184 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 OR2M4Q96R27 311 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 MTERF1Q99551 399 aaKnown RBP12.31□□□□□ -0.44
CLK3-201ENST00000345005 MVB12BQ9H7P6 319 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 CARS2Q9HA77 564 aaKnown RBP12.31□□□□□ -0.44
CLK3-201ENST00000345005 LMAN1LQ9HAT1 526 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 FGF22Q9HCT0 170 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 INIPQ9NRY2 104 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 SELENONQ9NZV5 590 aa12.31□□□□□ -0.44
CLK3-201ENST00000345005 PLAGL1Q9UM63 463 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms