RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ANGPTL1O95841 491 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 KLK1P06870 262 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 TAS2R50P59544 299 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 NFATC3Q12968 1075 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 PAGE2BQ5JRK9 111 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 FBXO46Q6PJ61 603 aaPredicted RBP19.26■□□□□ 0.67
VPS53-201ENST00000291074 TERB1Q8NA31 727 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 ATG16L2Q8NAA4 619 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 OR2L2Q8NH16 312 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 C16orf78Q8WTQ4 265 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 NODALQ96S42 347 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 TRIT1Q9H3H1 467 aaKnown RBP19.26■□□□□ 0.67
VPS53-201ENST00000291074 DYRK4Q9NR20 520 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 TM7SF3Q9NS93 570 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 KIF17Q9P2E2 1029 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 PRKAG2Q9UGJ0 569 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 TDRKHQ9Y2W6 561 aaKnown RBP19.26■□□□□ 0.67
VPS53-201ENST00000291074 ZNF451Q9Y4E5 1061 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 CCDC88CQ9P219 2028 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 TRIM64BA6NI03 449 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 FOXE1O00358 373 aaPredicted RBP19.25■□□□□ 0.67
VPS53-201ENST00000291074 AXIN1O15169 862 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 INMTO95050 263 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 NFATC1O95644 943 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 FURINP09958 794 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 DPTQ07507 201 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 B3GNT8Q7Z7M8 397 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 FBLIM1Q8WUP2 373 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 SLC35A5Q9BS91 424 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 BHLHE41Q9C0J9 482 aaPredicted RBP19.25■□□□□ 0.67
VPS53-201ENST00000291074 TMEM245Q9H330 911 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 ITM2CQ9NQX7 267 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 TMEM9Q9P0T7 183 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 ZNF282Q9UDV7 671 aaPredicted RBP19.25■□□□□ 0.67
VPS53-201ENST00000291074 SLC23A2Q9UGH3 650 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 WARS2Q9UGM6 360 aaKnown RBP19.25■□□□□ 0.67
VPS53-201ENST00000291074 DENND4AQ7Z401 1863 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 ALPK3Q96L96 1907 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 GRXCR1A8MXD5 290 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 SUV39H1O43463 412 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 CCNA2P20248 432 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 PCGF2P35227 344 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 IL12RB1P42701 662 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 IL18R1Q13478 541 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 ERN2Q76MJ5 926 aaKnown RBP19.25■□□□□ 0.67
VPS53-201ENST00000291074 VN1R5Q7Z5H4 357 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 TSEN54Q7Z6J9 526 aaKnown RBP19.25■□□□□ 0.67
VPS53-201ENST00000291074 TTC29Q8NA56 475 aaPredicted RBP19.25■□□□□ 0.67
VPS53-201ENST00000291074 C11orf65Q8NCR3 313 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 NRBF2Q96F24 287 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 CNDP2Q96KP4 475 aaKnown RBP19.25■□□□□ 0.67
VPS53-201ENST00000291074 LINC00615Q96LM1 132 aaPredicted RBP19.25■□□□□ 0.67
VPS53-201ENST00000291074 ASB16Q96NS5 453 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 OR52A5Q9H2C5 316 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 SPASTQ9UBP0 616 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 SNX5Q9Y5X3 404 aa19.25■□□□□ 0.67
VPS53-201ENST00000291074 COL4A3Q01955 1670 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 P2RY2P41231 377 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 TMBIM6P55061 237 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 TOP3AQ13472 1001 aaPredicted RBP19.24■□□□□ 0.67
VPS53-201ENST00000291074 SMN1Q16637 294 aaKnown RBP19.24■□□□□ 0.67
VPS53-201ENST00000291074 HIST2H2ACQ16777 129 aaPredicted RBP19.24■□□□□ 0.67
VPS53-201ENST00000291074 PRAMEF14Q5SWL7 426 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 PRAMEF13Q5VWM6 474 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 HIST2H2AA3Q6FI13 130 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 UBE2FQ969M7 185 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 PPCDCQ96CD2 204 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 PPP1R16AQ96I34 528 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 KRT84Q9NSB2 600 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 GMPPBQ9Y5P6 360 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 UGT2B11O75310 529 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 PCMT1P22061 227 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 PPIBP23284 216 aaKnown RBP19.24■□□□□ 0.67
VPS53-201ENST00000291074 CNTN1Q12860 1018 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 CYP27C1Q4G0S4 372 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 TBC1D15Q8TC07 691 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 SPPL2AQ8TCT8 520 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 CXorf40AQ8TE69 158 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 MUL1Q969V5 352 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 ADPRHL2Q9NX46 363 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 ERVK-18Q9QC07 812 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 CORO2BQ9UQ03 480 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 ATG2BQ96BY7 2078 aa19.24■□□□□ 0.67
VPS53-201ENST00000291074 PCCBP05166 539 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 HTR1BP28222 390 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 RRM2P31350 389 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 GP2P55259 537 aaKnown RBP19.23■□□□□ 0.67
VPS53-201ENST00000291074 PSRC1Q6PGN9 363 aaPredicted RBP19.23■□□□□ 0.67
VPS53-201ENST00000291074 PIWIL3Q7Z3Z3 882 aaKnown RBP19.23■□□□□ 0.67
VPS53-201ENST00000291074 HEATR4Q86WZ0 1026 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 ZNF514Q96K75 400 aaPredicted RBP19.23■□□□□ 0.67
VPS53-201ENST00000291074 FUNDC2Q9BWH2 189 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 SPATA9Q9BWV2 254 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 LGR4Q9BXB1 951 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 DPEP2Q9H4A9 486 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 RUBCNLQ9H714 662 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 MAPRE3Q9UPY8 281 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 TESMINQ9Y4I5 508 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 XIRP2A4UGR9 3374 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 C17orf113A0A1B0GUU1 675 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms