RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 OCLNQ16625 522 aa18.53■□□□□ 0.56
UPF1-201ENST00000262803 RUNDC3AQ59EK9 446 aa18.53■□□□□ 0.56
UPF1-201ENST00000262803 ERN2Q76MJ5 926 aaKnown RBP18.53■□□□□ 0.56
UPF1-201ENST00000262803 GOLGA7Q7Z5G4 137 aa18.53■□□□□ 0.56
UPF1-201ENST00000262803 TMEM126BQ8IUX1 230 aa18.53■□□□□ 0.56
UPF1-201ENST00000262803 ARMC10Q8N2F6 343 aa18.53■□□□□ 0.56
UPF1-201ENST00000262803 CLDN19Q8N6F1 224 aa18.53■□□□□ 0.56
UPF1-201ENST00000262803 STON2Q8WXE9 905 aa18.53■□□□□ 0.56
UPF1-201ENST00000262803 XYLT2Q9H1B5 865 aa18.53■□□□□ 0.56
UPF1-201ENST00000262803 ROBO1Q9Y6N7 1651 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 SFT2D3Q587I9 215 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 RABEPKQ7Z6M1 372 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 NPAS3Q8IXF0 933 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 IGSF21Q96ID5 467 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 A0A0G2JN53 185 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 HLA-DPB1P04440 258 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 EDNRAP25101 427 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 MC1RQ01726 317 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 GPAT4Q86UL3 456 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 OSTF1Q92882 214 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 TMEM74Q96NL1 305 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 PDE7BQ9NP56 450 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 MGAT4BQ9UQ53 548 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 LRRC42Q9Y546 428 aa18.52■□□□□ 0.56
UPF1-201ENST00000262803 FAM170BA6NMN3 283 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 OPN1SWP03999 348 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 EPCAMP16422 314 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 MATN1P21941 496 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 KCNJ5P48544 419 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 GDI2P50395 445 aaKnown RBP18.52■□□□□ 0.55
UPF1-201ENST00000262803 TRAM1Q15629 374 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 ZNF805Q5CZA5 627 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 RABL3Q5HYI8 236 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 OR6N1Q8NGY5 312 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 CYB5D2Q8WUJ1 264 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 STOX2Q9P2F5 926 aaPredicted RBP18.52■□□□□ 0.55
UPF1-201ENST00000262803 A0A1B0GVI7 797 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 CAPN5O15484 640 aaPredicted RBP18.52■□□□□ 0.55
UPF1-201ENST00000262803 PCDHGA12O60330 932 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 MMP20O60882 483 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 C2CD4AQ8NCU7 369 aaPredicted RBP18.52■□□□□ 0.55
UPF1-201ENST00000262803 WDR92Q96MX6 357 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 TSGA13Q96PP4 275 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 TMLHEQ9NVH6 421 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 CYTH4Q9UIA0 394 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 PMF1-BGLAPU3KQ54 211 aa18.52■□□□□ 0.55
UPF1-201ENST00000262803 LOC730098B7Z3J9 87 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 NOS1APO75052 506 aaPredicted RBP18.51■□□□□ 0.55
UPF1-201ENST00000262803 SCGB2A1O75556 95 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 G6PDP11413 515 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 GDF5P43026 501 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 ELOAQ14241 798 aaKnown RBP18.51■□□□□ 0.55
UPF1-201ENST00000262803 GFOD2Q3B7J2 385 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 MEDAGQ5VYS4 303 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 TREML1Q86YW5 311 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 UBE2J2Q8N2K1 259 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 KCNH6Q9H252 994 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 HTR3EA5X5Y0 456 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 CLDN7O95471 211 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 GALTP07902 379 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 BNIP3Q12983 259 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 GNPDA2Q8TDQ7 276 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 KCNA7Q96RP8 456 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 GFM1Q96RP9 751 aaKnown RBP18.51■□□□□ 0.55
UPF1-201ENST00000262803 CD244Q9BZW8 370 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 SLC22A4Q9H015 551 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 FBRSL1Q9HCM7 1045 aaKnown RBP18.51■□□□□ 0.55
UPF1-201ENST00000262803 HYKKA2RU49 373 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 PLOD2O00469 737 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 TUBA1BP68363 451 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 TUBA4AP68366 448 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 ASB18Q6ZVZ8 466 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 TUBA1AQ71U36 451 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 SETD7Q8WTS6 366 aaKnown RBP18.51■□□□□ 0.55
UPF1-201ENST00000262803 DHRS1Q96LJ7 313 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 CITED4Q96RK1 184 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 MARCH7Q9H992 704 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 EXOSC1Q9Y3B2 195 aaKnown RBP18.51■□□□□ 0.55
UPF1-201ENST00000262803 DNMT3AQ9Y6K1 912 aaPredicted RBP18.51■□□□□ 0.55
UPF1-201ENST00000262803 CNTN5O94779 1100 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 F8A1P23610 371 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 BDKRB1P46663 353 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 CD47Q08722 323 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 TRAM2Q15035 370 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 YIPF7Q8N8F6 280 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 SMG8Q8ND04 991 aaKnown RBP18.51■□□□□ 0.55
UPF1-201ENST00000262803 BIRC7Q96CA5 298 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 KCNC2Q96PR1 638 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 VRTNQ9H8Y1 702 aa18.51■□□□□ 0.55
UPF1-201ENST00000262803 PRAMEF33A0A0G2JMD5 474 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 PRSS51A0A1B0GVH4 220 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 PRAMEF10O60809 474 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 HK1P19367 917 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 UQCRC2P22695 453 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 S100A1P23297 94 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 TPTEP56180 551 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 SEC23BQ15437 767 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 AIFM2Q9BRQ8 373 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 TAS2R9Q9NYW1 312 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 GRHPRQ9UBQ7 328 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms