RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 E9PQ18 207 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 GFYI3L273 518 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 FPR1P21462 350 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 IDSP22304 550 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 IMPA1P29218 277 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 SPINT3P49223 89 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 PUM1Q14671 1186 aaKnown RBP eCLIP10.27□□□□□ -0.76
USP28-201ENST00000003302 ZNF846Q147U1 533 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 FLYWCH1Q4VC44 716 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 RNF180Q86T96 592 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 CACUL1Q86Y37 369 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 TCAIMQ8N3R3 496 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 PARP16Q8N5Y8 322 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 OR7G3Q8NG95 312 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 OR4D11Q8NGI4 311 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 NECTIN4Q96NY8 510 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 SLC46A2Q9BY10 475 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 TM9SF3Q9HD45 589 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 FBXO8Q9NRD0 319 aa10.27□□□□□ -0.76
USP28-201ENST00000003302 FAM32AQ9Y421 112 aaKnown RBP10.27□□□□□ -0.76
USP28-201ENST00000003302 A0A0G2JN53 185 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 TEX28O15482 410 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 AIREO43918 545 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 SELPP16109 830 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 GABRB1P18505 474 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 CST5P28325 142 aaPredicted RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 PPIGQ13427 754 aaKnown RBP eCLIP10.27□□□□□ -0.77
USP28-201ENST00000003302 TMIGD1Q6UXZ0 262 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 SERPINA11Q86U17 422 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 C11orf74Q86VG3 221 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 THOC6Q86W42 341 aaKnown RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 RNF168Q8IYW5 571 aaPredicted RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 L3MBTL4Q8NA19 623 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 DUSP26Q9BV47 211 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 BARHL1Q9BZE3 327 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 ZDHHC3Q9NYG2 299 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 PAIP2BQ9ULR5 123 aaKnown RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 TBX6O95947 436 aaPredicted RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 POU1F1P28069 291 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 LIM2P55344 173 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 ST3GAL4Q11206 333 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 SSX1Q16384 188 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 TIGD6Q17RP2 521 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 GDPD3Q7L5L3 318 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 TMPRSS11BQ86T26 416 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 LACC1Q8IV20 430 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 AMER3Q8N944 861 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 B3GNT7Q8NFL0 401 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 PKP4Q99569 1192 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 MACROD1Q9BQ69 325 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 TCF25Q9BQ70 676 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 RIOK2Q9BVS4 552 aaKnown RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 ASPSCR1Q9BZE9 553 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 ANKRA2Q9H9E1 313 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 HMG20AQ9NP66 347 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 C8orf4Q9NR00 106 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 VPS29Q9UBQ0 182 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 ABT1Q9ULW3 272 aaKnown RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 DYTNA2CJ06 578 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 PRKRAO75569 313 aaKnown RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 ANXA4P09525 319 aaPredicted RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 SNRPNP63162 240 aaKnown RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 SMARCB1Q12824 385 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 SEC23BQ15437 767 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 DNAJC22Q8N4W6 341 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 CMTM7Q96FZ5 175 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 RDH12Q96NR8 316 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 WRAP53Q9BUR4 548 aaKnown RBP10.27□□□□□ -0.77
USP28-201ENST00000003302 TPK1Q9H3S4 243 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 MAGIXQ9H6Y5 334 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 MS4A12Q9NXJ0 267 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 FBXL12Q9NXK8 326 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 MUTYHQ9UIF7 546 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 PCDHGA2Q9Y5H1 932 aa10.27□□□□□ -0.77
USP28-201ENST00000003302 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 METTL15A6NJ78 407 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 EPN2O95208 641 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 GASTP01350 101 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 FHP07954 510 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 ITGB8P26012 769 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 ITGA1P56199 1179 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 EIF3MQ7L2H7 374 aaKnown RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 RNF130Q86XS8 419 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 POC5Q8NA72 575 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 PCSK9Q8NBP7 692 aaKnown RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 OR52E4Q8NGH9 312 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 RAB8BQ92930 207 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 SLC6A18Q96N87 628 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 SUV39H2Q9H5I1 410 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 REEP1Q9H902 201 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 KCTD5Q9NXV2 234 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 STOX2Q9P2F5 926 aaPredicted RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 STOML2Q9UJZ1 356 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 GNG14A0A1W2PPG7 69 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 DVL2O14641 736 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 ALPPL2P10696 532 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 ATP1B2P14415 290 aaPredicted RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 MAGEA8P43361 318 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 TMED10P49755 219 aaKnown RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 ST13P50502 369 aaKnown RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms