RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeastyeast

Gene RRP40, Length 723 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RRP40YOL142W RSC58Q07979 502 aa7.12□□□□□ -1.27
RRP40YOL142W STU1P38198 1513 aa7.11□□□□□ -1.27
RRP40YOL142W YOR1P53049 1477 aa7.11□□□□□ -1.27
RRP40YOL142W CCZ1P38273 704 aa7.11□□□□□ -1.27
RRP40YOL142W YFL054CP43549 646 aa7.11□□□□□ -1.27
RRP40YOL142W YLR225CQ05948 407 aaKnown RBP7.11□□□□□ -1.27
RRP40YOL142W ESC2Q06340 456 aa7.11□□□□□ -1.27
RRP40YOL142W FAL1Q12099 399 aaKnown RBP7.11□□□□□ -1.27
RRP40YOL142W YPL066WQ12194 479 aa7.11□□□□□ -1.27
RRP40YOL142W RKM4Q12504 494 aa7.11□□□□□ -1.27
RRP40YOL142W CHD1P32657 1468 aa7.11□□□□□ -1.27
RRP40YOL142W TY1B-JR2P47100 1755 aaKnown RBP7.1□□□□□ -1.27
RRP40YOL142W TY1B-ER2Q03619 1755 aa7.1□□□□□ -1.27
RRP40YOL142W TY1B-MR1Q04214 1755 aa7.1□□□□□ -1.27
RRP40YOL142W TY1B-MR2Q04670 1755 aaKnown RBP7.1□□□□□ -1.27
RRP40YOL142W TY1B-LR1Q12088 1755 aaKnown RBP7.1□□□□□ -1.27
RRP40YOL142W TY1B-NL1Q12112 1755 aa7.1□□□□□ -1.27
RRP40YOL142W TY1B-GR1Q12141 1755 aa7.1□□□□□ -1.27
RRP40YOL142W TY1B-BLQ12490 1755 aa7.1□□□□□ -1.27
RRP40YOL142W BAS1P22035 811 aa7.1□□□□□ -1.27
RRP40YOL142W AIM26P32858 118 aa7.1□□□□□ -1.27
RRP40YOL142W PIK1P39104 1066 aa7.1□□□□□ -1.27
RRP40YOL142W OPI10Q08202 246 aa7.1□□□□□ -1.27
RRP40YOL142W NBA1Q08229 501 aaKnown RBP7.1□□□□□ -1.27
RRP40YOL142W DNF1P32660 1571 aa7.1□□□□□ -1.27
RRP40YOL142W POL12P38121 705 aaPredicted RBP7.09□□□□□ -1.27
RRP40YOL142W YGL176CP46945 554 aa7.09□□□□□ -1.27
RRP40YOL142W PRI2P20457 528 aa7.08□□□□□ -1.28
RRP40YOL142W ABD1P32783 436 aaPredicted RBP7.08□□□□□ -1.28
RRP40YOL142W YKL107WP34251 309 aa7.08□□□□□ -1.28
RRP40YOL142W LRG1P35688 1017 aa7.08□□□□□ -1.28
RRP40YOL142W DFG16Q99234 619 aa7.08□□□□□ -1.28
RRP40YOL142W RPL11AP0C0W9 174 aaKnown RBP7.07□□□□□ -1.28
RRP40YOL142W MXR1P40029 184 aa7.07□□□□□ -1.28
RRP40YOL142W SPP382Q06411 708 aaPredicted RBP7.07□□□□□ -1.28
RRP40YOL142W RSB1Q08417 382 aa7.07□□□□□ -1.28
RRP40YOL142W RPL11BQ3E757 174 aaPredicted RBP7.07□□□□□ -1.28
RRP40YOL142W SMC4Q12267 1418 aa7.07□□□□□ -1.28
RRP40YOL142W PAN1P32521 1480 aa7.06□□□□□ -1.28
RRP40YOL142W DBP2P24783 546 aaKnown RBP7.06□□□□□ -1.28
RRP40YOL142W AGP1P25376 633 aa7.06□□□□□ -1.28
RRP40YOL142W YKL069WP36088 180 aa7.06□□□□□ -1.28
RRP40YOL142W PNT1P38969 423 aa7.06□□□□□ -1.28
RRP40YOL142W KRI1P42846 591 aaKnown RBP7.06□□□□□ -1.28
RRP40YOL142W SPS1P08458 490 aa7.05□□□□□ -1.28
RRP40YOL142W SIP5P40210 489 aaKnown RBP7.05□□□□□ -1.28
RRP40YOL142W FOL2P51601 243 aaKnown RBP7.05□□□□□ -1.28
RRP40YOL142W NTE1Q04958 1679 aa7.04□□□□□ -1.28
RRP40YOL142W SBA1P28707 216 aaKnown RBP7.04□□□□□ -1.28
RRP40YOL142W PIN4P34217 668 aaKnown RBP RIP-Chip data7.04□□□□□ -1.28not detected
RRP40YOL142W ECL1P48235 211 aa7.03□□□□□ -1.28
RRP40YOL142W ACM1Q08981 209 aa7.03□□□□□ -1.28
RRP40YOL142W MMS22Q06164 1454 aa7.03□□□□□ -1.28
RRP40YOL142W SEG2P34250 1132 aa7.02□□□□□ -1.29
RRP40YOL142W UGA2P38067 497 aa7.02□□□□□ -1.29
RRP40YOL142W SNF7P39929 240 aaKnown RBP7.02□□□□□ -1.29
RRP40YOL142W SEC26P41810 973 aaKnown RBP7.02□□□□□ -1.29
RRP40YOL142W RPO21P04050 1733 aaKnown RBP7.01□□□□□ -1.29
RRP40YOL142W SLA2P33338 968 aa7.01□□□□□ -1.29
RRP40YOL142W VBA5P36172 582 aa7.01□□□□□ -1.29
RRP40YOL142W ETP1P38748 585 aaKnown RBP7.01□□□□□ -1.29
RRP40YOL142W GEM1P39722 662 aa7.01□□□□□ -1.29
RRP40YOL142W AVT1P47082 602 aa7.01□□□□□ -1.29
RRP40YOL142W SSF2Q12153 453 aaPredicted RBP7.01□□□□□ -1.29
RRP40YOL142W YDL177CQ12257 170 aa7.01□□□□□ -1.29
RRP40YOL142W YRF1-1P0CX20 1796 aa7□□□□□ -1.29
RRP40YOL142W YRF1-5P0CX21 1796 aa7□□□□□ -1.29
RRP40YOL142W YRF1-8P0CX22 1796 aa7□□□□□ -1.29
RRP40YOL142W MYO4P32492 1471 aa7□□□□□ -1.29
RRP40YOL142W ABZ1P37254 787 aaPredicted RBP7□□□□□ -1.29
RRP40YOL142W MBP1P39678 833 aa7□□□□□ -1.29
RRP40YOL142W SPF1P39986 1215 aaKnown RBP7□□□□□ -1.29
RRP40YOL142W SHE9Q04172 456 aa7□□□□□ -1.29
RRP40YOL142W TDA5Q06417 326 aaKnown RBP7□□□□□ -1.29
RRP40YOL142W WRS1Q12109 432 aaKnown RBP7□□□□□ -1.29
RRP40YOL142W SVS1Q12254 260 aa6.99□□□□□ -1.29
RRP40YOL142W VTH1P40438 1549 aa6.99□□□□□ -1.29
RRP40YOL142W VTH2P40890 1549 aa6.99□□□□□ -1.29
RRP40YOL142W BI4P03879 638 aa6.98□□□□□ -1.29
RRP40YOL142W ENV11P53246 860 aa6.98□□□□□ -1.29
RRP40YOL142W ATG13Q06628 738 aa6.98□□□□□ -1.29
RRP40YOL142W RFC5P38251 354 aa6.97□□□□□ -1.29
RRP40YOL142W SPP41P38904 1435 aa6.97□□□□□ -1.29
RRP40YOL142W MAP1Q01662 387 aaKnown RBP RIP-Chip data6.97□□□□□ -1.29not detected
RRP40YOL142W MET5P47169 1442 aa6.96□□□□□ -1.3
RRP40YOL142W THS1P04801 734 aaKnown RBP6.96□□□□□ -1.3
RRP40YOL142W ELM1P32801 640 aa6.96□□□□□ -1.3
RRP40YOL142W MRP8P35719 219 aa6.96□□□□□ -1.3
RRP40YOL142W MLP2P40457 1679 aa6.96□□□□□ -1.3
RRP40YOL142W ACE2P21192 770 aa6.95□□□□□ -1.3
RRP40YOL142W GAS1P22146 559 aaKnown RBP6.95□□□□□ -1.3
RRP40YOL142W GRX1P25373 110 aaKnown RBP6.95□□□□□ -1.3
RRP40YOL142W TSA1P34760 196 aaKnown RBP6.95□□□□□ -1.3
RRP40YOL142W MRPL22P53881 309 aa6.95□□□□□ -1.3
RRP40YOL142W RNQ1P25367 405 aa6.94□□□□□ -1.3
RRP40YOL142W STE5P32917 917 aa6.94□□□□□ -1.3
RRP40YOL142W YKL151CP36059 337 aa6.94□□□□□ -1.3
RRP40YOL142W RRT14P40470 206 aa6.94□□□□□ -1.3
RRP40YOL142W SNO2P53823 222 aa6.94□□□□□ -1.3
RRP40YOL142W RSM24Q03976 319 aa6.94□□□□□ -1.3
Retrieved 100 of 5,963 RNA–protein pairs in 65.2 ms