RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	USP42	Q9H9J4	1324 aa	Known RBP	19.85	■□□□□ 0.77
PHGDH-231	ENST00000641939	MMP10	P09238	476 aa		19.85	■□□□□ 0.77
PHGDH-231	ENST00000641939	NLGN2	Q8NFZ4	835 aa		19.85	■□□□□ 0.77
PHGDH-231	ENST00000641939	CD2AP	Q9Y5K6	639 aa		19.85	■□□□□ 0.77
PHGDH-231	ENST00000641939	KDM3B	Q7LBC6	1761 aa		19.85	■□□□□ 0.77
PHGDH-231	ENST00000641939	SRP68	Q9UHB9	627 aa	Known RBP	19.84	■□□□□ 0.77
PHGDH-231	ENST00000641939	COL15A1	P39059	1388 aa		19.83	■□□□□ 0.77
PHGDH-231	ENST00000641939	CANX	P27824	592 aa	Known RBP	19.83	■□□□□ 0.77
PHGDH-231	ENST00000641939	KIF13B	Q9NQT8	1826 aa		19.82	■□□□□ 0.76
PHGDH-231	ENST00000641939	ZPR1	O75312	459 aa		19.82	■□□□□ 0.76
PHGDH-231	ENST00000641939	RIPK4	P57078	832 aa		19.82	■□□□□ 0.76
PHGDH-231	ENST00000641939	CCDC146	Q8IYE0	955 aa		19.82	■□□□□ 0.76
PHGDH-231	ENST00000641939	PNISR	Q8TF01	805 aa	Known RBP	19.82	■□□□□ 0.76
PHGDH-231	ENST00000641939	ADAMTS8	Q9UP79	889 aa		19.82	■□□□□ 0.76
PHGDH-231	ENST00000641939	CHD4	Q14839	1912 aa		19.81	■□□□□ 0.76
PHGDH-231	ENST00000641939	SNRPA1	P09661	255 aa	Known RBP	19.81	■□□□□ 0.76
PHGDH-231	ENST00000641939	TMPO	P42166	694 aa	Known RBP	19.81	■□□□□ 0.76
PHGDH-231	ENST00000641939	FKBP8	Q14318	412 aa		19.81	■□□□□ 0.76
PHGDH-231	ENST00000641939	RUNDC1	Q96C34	613 aa		19.81	■□□□□ 0.76
PHGDH-231	ENST00000641939	THUMPD2	Q9BTF0	503 aa	Known RBP	19.81	■□□□□ 0.76
PHGDH-231	ENST00000641939	MIS18A	Q9NYP9	233 aa		19.81	■□□□□ 0.76
PHGDH-231	ENST00000641939	EIF5	P55010	431 aa	Known RBP	19.8	■□□□□ 0.76
PHGDH-231	ENST00000641939	GPR162	Q16538	588 aa		19.8	■□□□□ 0.76
PHGDH-231	ENST00000641939	NARF	Q9UHQ1	456 aa		19.8	■□□□□ 0.76
PHGDH-231	ENST00000641939		A0A087WZG4	1122 aa		19.79	■□□□□ 0.76
PHGDH-231	ENST00000641939	A1BG	P04217	495 aa		19.79	■□□□□ 0.76
PHGDH-231	ENST00000641939	LMOD3	Q0VAK6	560 aa		19.79	■□□□□ 0.76
PHGDH-231	ENST00000641939	USPL1	Q5W0Q7	1092 aa		19.79	■□□□□ 0.76
PHGDH-231	ENST00000641939	USP16	Q9Y5T5	823 aa		19.79	■□□□□ 0.76
PHGDH-231	ENST00000641939	PARP3	Q9Y6F1	533 aa		19.79	■□□□□ 0.76
PHGDH-231	ENST00000641939	LAMB4	A4D0S4	1761 aa		19.78	■□□□□ 0.76
PHGDH-231	ENST00000641939	IL6ST	P40189	918 aa	Predicted RBP	19.78	■□□□□ 0.76
PHGDH-231	ENST00000641939	PRAMEF22	A3QJZ6	481 aa		19.77	■□□□□ 0.76
PHGDH-231	ENST00000641939	PELP1	Q8IZL8	1130 aa	Known RBP	19.77	■□□□□ 0.76
PHGDH-231	ENST00000641939	RRP7A	Q9Y3A4	280 aa	Known RBP	19.77	■□□□□ 0.76
PHGDH-231	ENST00000641939	NEUROD2	Q15784	382 aa		19.76	■□□□□ 0.75
PHGDH-231	ENST00000641939	ZNF330	Q9Y3S2	320 aa	Predicted RBP	19.76	■□□□□ 0.75
PHGDH-231	ENST00000641939	C10orf71	Q711Q0	1435 aa		19.76	■□□□□ 0.75
PHGDH-231	ENST00000641939	N4BP2	Q86UW6	1770 aa	Predicted RBP	19.75	■□□□□ 0.75
PHGDH-231	ENST00000641939	SCN7A	Q01118	1682 aa		19.75	■□□□□ 0.75
PHGDH-231	ENST00000641939	AFDN	P55196	1824 aa	Known RBP	19.75	■□□□□ 0.75
PHGDH-231	ENST00000641939	ANP32C	O43423	234 aa		19.75	■□□□□ 0.75
PHGDH-231	ENST00000641939	TM4SF1	P30408	202 aa		19.75	■□□□□ 0.75
PHGDH-231	ENST00000641939	DDR1	Q08345	913 aa		19.75	■□□□□ 0.75
PHGDH-231	ENST00000641939	NPM2	Q86SE8	214 aa	Known RBP	19.75	■□□□□ 0.75
PHGDH-231	ENST00000641939	KIAA1551	Q9HCM1	1747 aa		19.74	■□□□□ 0.75
PHGDH-231	ENST00000641939	EIF4A1	P60842	406 aa	Known RBP	19.74	■□□□□ 0.75
PHGDH-231	ENST00000641939	BCL2L12	Q9HB09	334 aa		19.74	■□□□□ 0.75
PHGDH-231	ENST00000641939	POLRMT	O00411	1230 aa	Known RBP	19.73	■□□□□ 0.75
PHGDH-231	ENST00000641939	YY1	P25490	414 aa		19.73	■□□□□ 0.75
PHGDH-231	ENST00000641939	BABAM1	Q9NWV8	329 aa		19.73	■□□□□ 0.75
PHGDH-231	ENST00000641939	TSPYL4	Q9UJ04	414 aa		19.73	■□□□□ 0.75
PHGDH-231	ENST00000641939	BCOR	Q6W2J9	1755 aa		19.72	■□□□□ 0.75
PHGDH-231	ENST00000641939	GIGYF1	O75420	1035 aa	Predicted RBP	19.72	■□□□□ 0.75
PHGDH-231	ENST00000641939	YBX3	P16989	372 aa	Known RBP eCLIP	19.72	■□□□□ 0.75
PHGDH-231	ENST00000641939	PIP4K2A	P48426	406 aa	Predicted RBP	19.72	■□□□□ 0.75
PHGDH-231	ENST00000641939	TGFB2	P61812	414 aa		19.72	■□□□□ 0.75
PHGDH-231	ENST00000641939	NFIX	Q14938	502 aa		19.72	■□□□□ 0.75
PHGDH-231	ENST00000641939	CCDC184	Q52MB2	194 aa		19.72	■□□□□ 0.75
PHGDH-231	ENST00000641939	TRIM35	Q9UPQ4	493 aa		19.72	■□□□□ 0.75
PHGDH-231	ENST00000641939	TBC1D2B	Q9UPU7	963 aa		19.72	■□□□□ 0.75
PHGDH-231	ENST00000641939	NRXN2	Q9P2S2	1712 aa		19.71	■□□□□ 0.75
PHGDH-231	ENST00000641939	PXDNL	A1KZ92	1463 aa		19.71	■□□□□ 0.75
PHGDH-231	ENST00000641939	GRIN3B	O60391	1043 aa		19.7	■□□□□ 0.74
PHGDH-231	ENST00000641939	BRCA1	P38398	1863 aa	Known RBP	19.7	■□□□□ 0.74
PHGDH-231	ENST00000641939	NBPF26	B4DH59	902 aa		19.69	■□□□□ 0.74
PHGDH-231	ENST00000641939	APAF1	O14727	1248 aa		19.69	■□□□□ 0.74
PHGDH-231	ENST00000641939	NBPF10	Q6P3W6	841 aa	Known RBP	19.69	■□□□□ 0.74
PHGDH-231	ENST00000641939	DZIP3	Q86Y13	1208 aa	Known RBP	19.69	■□□□□ 0.74
PHGDH-231	ENST00000641939	NBPF15	Q8N660	670 aa		19.69	■□□□□ 0.74
PHGDH-231	ENST00000641939	CAMTA2	O94983	1202 aa		19.68	■□□□□ 0.74
PHGDH-231	ENST00000641939		A0A0G2JLW4	131 aa		19.67	■□□□□ 0.74
PHGDH-231	ENST00000641939	TBC1D9B	Q66K14	1250 aa		19.67	■□□□□ 0.74
PHGDH-231	ENST00000641939	BICDL1	Q6ZP65	573 aa		19.67	■□□□□ 0.74
PHGDH-231	ENST00000641939	WWC3	Q9ULE0	1092 aa		19.67	■□□□□ 0.74
PHGDH-231	ENST00000641939	CHL1	O00533	1208 aa		19.66	■□□□□ 0.74
PHGDH-231	ENST00000641939	SERPINB2	P05120	415 aa		19.66	■□□□□ 0.74
PHGDH-231	ENST00000641939	DPEP1	P16444	411 aa		19.66	■□□□□ 0.74
PHGDH-231	ENST00000641939	MRS2	Q9HD23	443 aa		19.66	■□□□□ 0.74
PHGDH-231	ENST00000641939	LAS1L	Q9Y4W2	734 aa	Known RBP	19.66	■□□□□ 0.74
PHGDH-231	ENST00000641939	CLEC4G	Q6UXB4	293 aa		19.64	■□□□□ 0.73
PHGDH-231	ENST00000641939	ZNF652	Q9Y2D9	606 aa		19.64	■□□□□ 0.73
PHGDH-231	ENST00000641939	CARMIL3	Q8ND23	1372 aa		19.64	■□□□□ 0.73
PHGDH-231	ENST00000641939	NUP98	P52948	1817 aa		19.63	■□□□□ 0.73
PHGDH-231	ENST00000641939	ARFGEF1	Q9Y6D6	1849 aa		19.63	■□□□□ 0.73
PHGDH-231	ENST00000641939	ERBB4	Q15303	1308 aa		19.63	■□□□□ 0.73
PHGDH-231	ENST00000641939	SETDB2	Q96T68	719 aa		19.63	■□□□□ 0.73
PHGDH-231	ENST00000641939	RGL2	O15211	777 aa		19.62	■□□□□ 0.73
PHGDH-231	ENST00000641939	KCNA3	P22001	575 aa		19.62	■□□□□ 0.73
PHGDH-231	ENST00000641939	CFAP44	Q96MT7	982 aa		19.62	■□□□□ 0.73
PHGDH-231	ENST00000641939	ANKRD31	Q8N7Z5	1873 aa		19.62	■□□□□ 0.73
PHGDH-231	ENST00000641939	DLEC1	Q9Y238	1755 aa		19.62	■□□□□ 0.73
PHGDH-231	ENST00000641939	MYL6B	P14649	208 aa		19.61	■□□□□ 0.73
PHGDH-231	ENST00000641939	EIF2S2	P20042	333 aa	Known RBP	19.61	■□□□□ 0.73
PHGDH-231	ENST00000641939	CALD1	Q05682	793 aa	Known RBP	19.61	■□□□□ 0.73
PHGDH-231	ENST00000641939	NGEF	Q8N5V2	710 aa		19.61	■□□□□ 0.73
PHGDH-231	ENST00000641939	PIM2	Q9P1W9	311 aa		19.61	■□□□□ 0.73
PHGDH-231	ENST00000641939	BCS1L	Q9Y276	419 aa		19.61	■□□□□ 0.73
PHGDH-231	ENST00000641939	CHRNA5	P30532	468 aa		19.6	■□□□□ 0.73
PHGDH-231	ENST00000641939	ERVV-1	B6SEH8	477 aa		19.58	■□□□□ 0.72

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms