RNA–Protein interactions for RNA: ENST00000640568.1

TSPAN9-208, Transcript of tetraspanin 9, human

TSL 5

Gene TSPAN9, Length 1,465 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSPAN9-208	ENST00000640568	EIF2S2	P20042	333 aa	Known RBP	27.83	■■■□□ 2.05
TSPAN9-208	ENST00000640568	LINC00116	Q8NCU8	138 aa		27.83	■■■□□ 2.05
TSPAN9-208	ENST00000640568	USP16	Q9Y5T5	823 aa		27.83	■■■□□ 2.05
TSPAN9-208	ENST00000640568	TSPYL6	Q8N831	410 aa		27.83	■■■□□ 2.04
TSPAN9-208	ENST00000640568	CHMP4A	Q9BY43	222 aa		27.82	■■■□□ 2.04
TSPAN9-208	ENST00000640568	CYP19A1	P11511	503 aa	Predicted RBP	27.81	■■■□□ 2.04
TSPAN9-208	ENST00000640568	HDGFL1	Q5TGJ6	251 aa		27.81	■■■□□ 2.04
TSPAN9-208	ENST00000640568	MYH14	Q7Z406	1995 aa	Known RBP	27.8	■■■□□ 2.04
TSPAN9-208	ENST00000640568	NECTIN2	Q92692	538 aa		27.79	■■■□□ 2.04
TSPAN9-208	ENST00000640568	AK7	Q96M32	723 aa		27.79	■■■□□ 2.04
TSPAN9-208	ENST00000640568	CRKL	P46109	303 aa	Known RBP	27.78	■■■□□ 2.04
TSPAN9-208	ENST00000640568	CNTNAP4	Q9C0A0	1308 aa		27.78	■■■□□ 2.04
TSPAN9-208	ENST00000640568	SOCS7	O14512	581 aa		27.77	■■■□□ 2.04
TSPAN9-208	ENST00000640568	CCDC30	Q5VVM6	783 aa		27.76	■■■□□ 2.04
TSPAN9-208	ENST00000640568	CCDC87	Q9NVE4	849 aa		27.76	■■■□□ 2.04
TSPAN9-208	ENST00000640568	CACNA1F	O60840	1977 aa		27.76	■■■□□ 2.03
TSPAN9-208	ENST00000640568	VAMP4	O75379	141 aa		27.76	■■■□□ 2.03
TSPAN9-208	ENST00000640568	CT47B1	P0C2W7	299 aa	Predicted RBP	27.76	■■■□□ 2.03
TSPAN9-208	ENST00000640568	RC3H1	Q5TC82	1133 aa	Known RBP	27.76	■■■□□ 2.03
TSPAN9-208	ENST00000640568	NBPF14	Q5TI25	921 aa		27.76	■■■□□ 2.03
TSPAN9-208	ENST00000640568	A1BG	P04217	495 aa		27.75	■■■□□ 2.03
TSPAN9-208	ENST00000640568	STK32B	Q9NY57	414 aa		27.75	■■■□□ 2.03
TSPAN9-208	ENST00000640568	UBR3	Q6ZT12	1888 aa		27.74	■■■□□ 2.03
TSPAN9-208	ENST00000640568	ERBB4	Q15303	1308 aa		27.74	■■■□□ 2.03
TSPAN9-208	ENST00000640568	GNPAT	O15228	680 aa		27.74	■■■□□ 2.03
TSPAN9-208	ENST00000640568	CANX	P27824	592 aa	Known RBP	27.74	■■■□□ 2.03
TSPAN9-208	ENST00000640568	NPM2	Q86SE8	214 aa	Known RBP	27.74	■■■□□ 2.03
TSPAN9-208	ENST00000640568	ZBTB1	Q9Y2K1	713 aa		27.74	■■■□□ 2.03
TSPAN9-208	ENST00000640568	STK31	Q9BXU1	1019 aa		27.73	■■■□□ 2.03
TSPAN9-208	ENST00000640568	TUBGCP6	Q96RT7	1819 aa		27.73	■■■□□ 2.03
TSPAN9-208	ENST00000640568	INTS5	Q6P9B9	1019 aa	Known RBP	27.72	■■■□□ 2.03
TSPAN9-208	ENST00000640568	ZNF330	Q9Y3S2	320 aa	Predicted RBP	27.72	■■■□□ 2.03
TSPAN9-208	ENST00000640568	PIP4K2A	P48426	406 aa	Predicted RBP	27.71	■■■□□ 2.03
TSPAN9-208	ENST00000640568	ZNF428	Q96B54	188 aa		27.71	■■■□□ 2.03
TSPAN9-208	ENST00000640568	TFCP2L1	Q9NZI6	479 aa		27.71	■■■□□ 2.03
TSPAN9-208	ENST00000640568	DBF4	Q9UBU7	674 aa	Predicted RBP	27.71	■■■□□ 2.03
TSPAN9-208	ENST00000640568	RTCB	Q9Y3I0	505 aa	Known RBP	27.71	■■■□□ 2.03
TSPAN9-208	ENST00000640568	MYL6B	P14649	208 aa		27.7	■■■□□ 2.03
TSPAN9-208	ENST00000640568	ZNF827	Q17R98	1081 aa		27.7	■■■□□ 2.03
TSPAN9-208	ENST00000640568	AKT1S1	Q96B36	256 aa		27.7	■■■□□ 2.03
TSPAN9-208	ENST00000640568	CHPF2	Q9P2E5	772 aa		27.7	■■■□□ 2.03
TSPAN9-208	ENST00000640568	ANO8	Q9HCE9	1232 aa	Predicted RBP	27.7	■■■□□ 2.02
TSPAN9-208	ENST00000640568	QSER1	Q2KHR3	1735 aa		27.69	■■■□□ 2.02
TSPAN9-208	ENST00000640568	TCERG1	O14776	1098 aa	Known RBP	27.69	■■■□□ 2.02
TSPAN9-208	ENST00000640568	RPS6KA4	O75676	772 aa		27.69	■■■□□ 2.02
TSPAN9-208	ENST00000640568	IL6ST	P40189	918 aa	Predicted RBP	27.69	■■■□□ 2.02
TSPAN9-208	ENST00000640568	SLC15A2	Q16348	729 aa		27.69	■■■□□ 2.02
TSPAN9-208	ENST00000640568	DDX21	Q9NR30	783 aa	Known RBP eCLIP	27.69	■■■□□ 2.02
TSPAN9-208	ENST00000640568	PHF14	O94880	888 aa		27.67	■■■□□ 2.02
TSPAN9-208	ENST00000640568	NBPF26	B4DH59	902 aa		27.66	■■■□□ 2.02
TSPAN9-208	ENST00000640568	ANXA1	P04083	346 aa		27.66	■■■□□ 2.02
TSPAN9-208	ENST00000640568	NBPF10	Q6P3W6	841 aa	Known RBP	27.66	■■■□□ 2.02
TSPAN9-208	ENST00000640568	NBPF15	Q8N660	670 aa		27.66	■■■□□ 2.02
TSPAN9-208	ENST00000640568	COL15A1	P39059	1388 aa		27.65	■■■□□ 2.02
TSPAN9-208	ENST00000640568	SSFA2	P28290	1259 aa		27.65	■■■□□ 2.02
TSPAN9-208	ENST00000640568	HYPK	Q9NX55	129 aa		27.65	■■■□□ 2.02
TSPAN9-208	ENST00000640568	PDIA6	Q15084	440 aa		27.64	■■■□□ 2.02
TSPAN9-208	ENST00000640568	PROSER3	Q2NL68	480 aa		27.64	■■■□□ 2.02
TSPAN9-208	ENST00000640568	ALDH1L2	Q3SY69	923 aa		27.64	■■■□□ 2.02
TSPAN9-208	ENST00000640568	ARX	Q96QS3	562 aa		27.64	■■■□□ 2.02
TSPAN9-208	ENST00000640568	SLC4A2	P04920	1241 aa		27.64	■■■□□ 2.01
TSPAN9-208	ENST00000640568	ADRA2B	P18089	450 aa		27.64	■■■□□ 2.01
TSPAN9-208	ENST00000640568	EIF5	P55010	431 aa	Known RBP	27.64	■■■□□ 2.01
TSPAN9-208	ENST00000640568	TRAPPC3L	Q5T215	181 aa		27.64	■■■□□ 2.01
TSPAN9-208	ENST00000640568	FLAD1	Q8NFF5	587 aa		27.64	■■■□□ 2.01
TSPAN9-208	ENST00000640568	SMC4	Q9NTJ3	1288 aa		27.64	■■■□□ 2.01
TSPAN9-208	ENST00000640568	C4A	P0C0L4	1744 aa		27.63	■■■□□ 2.01
TSPAN9-208	ENST00000640568		A0A087WZG4	1122 aa		27.63	■■■□□ 2.01
TSPAN9-208	ENST00000640568	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	27.63	■■■□□ 2.01
TSPAN9-208	ENST00000640568	SSH1	Q8WYL5	1049 aa		27.62	■■■□□ 2.01
TSPAN9-208	ENST00000640568	BCL2L13	Q9BXK5	485 aa		27.62	■■■□□ 2.01
TSPAN9-208	ENST00000640568	MSH5	O43196	834 aa		27.61	■■■□□ 2.01
TSPAN9-208	ENST00000640568	RARS	P54136	660 aa	Known RBP	27.61	■■■□□ 2.01
TSPAN9-208	ENST00000640568	RFC4	P35249	363 aa		27.6	■■■□□ 2.01
TSPAN9-208	ENST00000640568	AIMP1	Q12904	312 aa	Known RBP	27.6	■■■□□ 2.01
TSPAN9-208	ENST00000640568	SMIM5	Q71RC9	77 aa		27.6	■■■□□ 2.01
TSPAN9-208	ENST00000640568	KIF6	Q6ZMV9	814 aa		27.59	■■■□□ 2.01
TSPAN9-208	ENST00000640568	AMIGO3	Q86WK7	504 aa		27.59	■■■□□ 2.01
TSPAN9-208	ENST00000640568	DZIP3	Q86Y13	1208 aa	Known RBP	27.58	■■■□□ 2.01
TSPAN9-208	ENST00000640568	XAGE3	Q8WTP9	111 aa		27.58	■■■□□ 2.01
TSPAN9-208	ENST00000640568	ARHGEF1	Q92888	912 aa	Known RBP	27.58	■■■□□ 2.01
TSPAN9-208	ENST00000640568	PHAX	Q9H814	394 aa	Known RBP	27.58	■■■□□ 2.01
TSPAN9-208	ENST00000640568	PNPLA7	Q6ZV29	1317 aa		27.58	■■■□□ 2.01
TSPAN9-208	ENST00000640568	COPS6	Q7L5N1	327 aa		27.57	■■■□□ 2
TSPAN9-208	ENST00000640568	MRPL50	Q8N5N7	158 aa	Known RBP	27.57	■■■□□ 2
TSPAN9-208	ENST00000640568	BCOR	Q6W2J9	1755 aa		27.57	■■■□□ 2
TSPAN9-208	ENST00000640568	ZPR1	O75312	459 aa		27.57	■■■□□ 2
TSPAN9-208	ENST00000640568	R3HDM1	Q15032	1099 aa	Known RBP	27.57	■■■□□ 2
TSPAN9-208	ENST00000640568	LRP10	Q7Z4F1	713 aa		27.57	■■■□□ 2
TSPAN9-208	ENST00000640568	RCAN3	Q9UKA8	241 aa		27.57	■■■□□ 2
TSPAN9-208	ENST00000640568	TBC1D2B	Q9UPU7	963 aa		27.57	■■■□□ 2
TSPAN9-208	ENST00000640568	COL23A1	Q86Y22	540 aa	Predicted RBP	27.56	■■■□□ 2
TSPAN9-208	ENST00000640568	SCN7A	Q01118	1682 aa		27.55	■■■□□ 2
TSPAN9-208	ENST00000640568	DDX58	O95786	925 aa	Known RBP	27.55	■■■□□ 2
TSPAN9-208	ENST00000640568	FLII	Q13045	1269 aa		27.55	■■■□□ 2
TSPAN9-208	ENST00000640568	TTLL7	Q6ZT98	887 aa		27.55	■■■□□ 2
TSPAN9-208	ENST00000640568	G2E3	Q7L622	706 aa		27.54	■■■□□ 2
TSPAN9-208	ENST00000640568	KIF16B	Q96L93	1317 aa		27.53	■■■□□ 2
TSPAN9-208	ENST00000640568	FKBP5	Q13451	457 aa	Predicted RBP	27.53	■■■□□ 2
TSPAN9-208	ENST00000640568	NARF	Q9UHQ1	456 aa		27.53	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms