RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 LMOD3Q0VAK6 560 aa20.66■□□□□ 0.9
LINC00339-207ENST00000634712 UBR2Q8IWV8 1755 aa20.65■□□□□ 0.9
LINC00339-207ENST00000634712 TMPOP42166 694 aaKnown RBP20.65■□□□□ 0.9
LINC00339-207ENST00000634712 NEUROD2Q15784 382 aa20.65■□□□□ 0.9
LINC00339-207ENST00000634712 NPM2Q86SE8 214 aaKnown RBP20.65■□□□□ 0.9
LINC00339-207ENST00000634712 MIS18AQ9NYP9 233 aa20.65■□□□□ 0.9
LINC00339-207ENST00000634712 ZBTB1Q9Y2K1 713 aa20.65■□□□□ 0.9
LINC00339-207ENST00000634712 DLG5Q8TDM6 1919 aa20.65■□□□□ 0.9
LINC00339-207ENST00000634712 MMP10P09238 476 aa20.64■□□□□ 0.89
LINC00339-207ENST00000634712 GYS1P13807 737 aa20.64■□□□□ 0.89
LINC00339-207ENST00000634712 THUMPD2Q9BTF0 503 aaKnown RBP20.64■□□□□ 0.89
LINC00339-207ENST00000634712 SOS1Q07889 1333 aaPredicted RBP20.64■□□□□ 0.89
LINC00339-207ENST00000634712 SNRPA1P09661 255 aaKnown RBP20.63■□□□□ 0.89
LINC00339-207ENST00000634712 SRP68Q9UHB9 627 aaKnown RBP20.63■□□□□ 0.89
LINC00339-207ENST00000634712 RRP7AQ9Y3A4 280 aaKnown RBP20.63■□□□□ 0.89
LINC00339-207ENST00000634712 CD2APQ9Y5K6 639 aa20.63■□□□□ 0.89
LINC00339-207ENST00000634712 ZNF330Q9Y3S2 320 aaPredicted RBP20.62■□□□□ 0.89
LINC00339-207ENST00000634712 PARP3Q9Y6F1 533 aa20.62■□□□□ 0.89
LINC00339-207ENST00000634712 USP42Q9H9J4 1324 aaKnown RBP20.62■□□□□ 0.89
LINC00339-207ENST00000634712 A0A087WZG4 1122 aa20.61■□□□□ 0.89
LINC00339-207ENST00000634712 COL15A1P39059 1388 aa20.61■□□□□ 0.89
LINC00339-207ENST00000634712 GPR162Q16538 588 aa20.6■□□□□ 0.89
LINC00339-207ENST00000634712 USPL1Q5W0Q7 1092 aa20.6■□□□□ 0.89
LINC00339-207ENST00000634712 PELP1Q8IZL8 1130 aaKnown RBP20.6■□□□□ 0.89
LINC00339-207ENST00000634712 NLGN2Q8NFZ4 835 aa20.6■□□□□ 0.89
LINC00339-207ENST00000634712 USP16Q9Y5T5 823 aa20.6■□□□□ 0.89
LINC00339-207ENST00000634712 A1BGP04217 495 aa20.59■□□□□ 0.89
LINC00339-207ENST00000634712 NARFQ9UHQ1 456 aa20.59■□□□□ 0.89
LINC00339-207ENST00000634712 EIF5P55010 431 aaKnown RBP20.59■□□□□ 0.89
LINC00339-207ENST00000634712 FKBP8Q14318 412 aa20.59■□□□□ 0.89
LINC00339-207ENST00000634712 TSPYL4Q9UJ04 414 aa20.59■□□□□ 0.89
LINC00339-207ENST00000634712 PRAMEF22A3QJZ6 481 aa20.58■□□□□ 0.88
LINC00339-207ENST00000634712 IL6STP40189 918 aaPredicted RBP20.58■□□□□ 0.88
LINC00339-207ENST00000634712 C4AP0C0L4 1744 aa20.57■□□□□ 0.88
LINC00339-207ENST00000634712 EIF4A1P60842 406 aaKnown RBP20.56■□□□□ 0.88
LINC00339-207ENST00000634712 MRS2Q9HD23 443 aa20.56■□□□□ 0.88
LINC00339-207ENST00000634712 CCDC184Q52MB2 194 aa20.55■□□□□ 0.88
LINC00339-207ENST00000634712 BABAM1Q9NWV8 329 aa20.55■□□□□ 0.88
LINC00339-207ENST00000634712 APAF1O14727 1248 aa20.54■□□□□ 0.88
LINC00339-207ENST00000634712 TBC1D2BQ9UPU7 963 aa20.54■□□□□ 0.88
LINC00339-207ENST00000634712 LAS1LQ9Y4W2 734 aaKnown RBP20.54■□□□□ 0.88
LINC00339-207ENST00000634712 GIGYF1O75420 1035 aaPredicted RBP20.53■□□□□ 0.88
LINC00339-207ENST00000634712 PIP4K2AP48426 406 aaPredicted RBP20.53■□□□□ 0.88
LINC00339-207ENST00000634712 TRIM35Q9UPQ4 493 aa20.53■□□□□ 0.88
LINC00339-207ENST00000634712 TM4SF1P30408 202 aa20.52■□□□□ 0.88
LINC00339-207ENST00000634712 DZIP3Q86Y13 1208 aaKnown RBP20.51■□□□□ 0.87
LINC00339-207ENST00000634712 TGFB2P61812 414 aa20.5■□□□□ 0.87
LINC00339-207ENST00000634712 DDR1Q08345 913 aa20.5■□□□□ 0.87
LINC00339-207ENST00000634712 NFIXQ14938 502 aa20.5■□□□□ 0.87
LINC00339-207ENST00000634712 BICDL1Q6ZP65 573 aa20.5■□□□□ 0.87
LINC00339-207ENST00000634712 BCL2L12Q9HB09 334 aa20.5■□□□□ 0.87
LINC00339-207ENST00000634712 KDM3BQ7LBC6 1761 aa20.5■□□□□ 0.87
LINC00339-207ENST00000634712 POLRMTO00411 1230 aaKnown RBP20.49■□□□□ 0.87
LINC00339-207ENST00000634712 GRIN3BO60391 1043 aa20.49■□□□□ 0.87
LINC00339-207ENST00000634712 YY1P25490 414 aa20.49■□□□□ 0.87
LINC00339-207ENST00000634712 CALD1Q05682 793 aaKnown RBP20.48■□□□□ 0.87
LINC00339-207ENST00000634712 NBPF26B4DH59 902 aa20.47■□□□□ 0.87
LINC00339-207ENST00000634712 CHL1O00533 1208 aa20.47■□□□□ 0.87
LINC00339-207ENST00000634712 SERPINB2P05120 415 aa20.47■□□□□ 0.87
LINC00339-207ENST00000634712 NBPF10Q6P3W6 841 aaKnown RBP20.47■□□□□ 0.87
LINC00339-207ENST00000634712 NBPF15Q8N660 670 aa20.47■□□□□ 0.87
LINC00339-207ENST00000634712 WWC3Q9ULE0 1092 aa20.47■□□□□ 0.87
LINC00339-207ENST00000634712 A0A0G2JLW4 131 aa20.46■□□□□ 0.87
LINC00339-207ENST00000634712 CAMTA2O94983 1202 aa20.46■□□□□ 0.87
LINC00339-207ENST00000634712 EIF2S2P20042 333 aaKnown RBP20.46■□□□□ 0.87
LINC00339-207ENST00000634712 NGEFQ8N5V2 710 aa20.46■□□□□ 0.87
LINC00339-207ENST00000634712 ZNF652Q9Y2D9 606 aa20.46■□□□□ 0.87
LINC00339-207ENST00000634712 C10orf71Q711Q0 1435 aa20.46■□□□□ 0.87
LINC00339-207ENST00000634712 YBX3P16989 372 aaKnown RBP eCLIP20.46■□□□□ 0.871e-7■■■■□ 23.4
LINC00339-207ENST00000634712 TBC1D9BQ66K14 1250 aa20.46■□□□□ 0.87
LINC00339-207ENST00000634712 CFAP44Q96MT7 982 aa20.46■□□□□ 0.87
LINC00339-207ENST00000634712 SETDB2Q96T68 719 aa20.46■□□□□ 0.87
LINC00339-207ENST00000634712 NPHP1O15259 732 aa20.45■□□□□ 0.86
LINC00339-207ENST00000634712 MYL6BP14649 208 aa20.45■□□□□ 0.86
LINC00339-207ENST00000634712 DPEP1P16444 411 aa20.44■□□□□ 0.86
LINC00339-207ENST00000634712 CLEC4GQ6UXB4 293 aa20.44■□□□□ 0.86
LINC00339-207ENST00000634712 LAMB4A4D0S4 1761 aa20.43■□□□□ 0.86
LINC00339-207ENST00000634712 ERBB4Q15303 1308 aa20.42■□□□□ 0.86
LINC00339-207ENST00000634712 UTRNP46939 3433 aa20.42■□□□□ 0.86
LINC00339-207ENST00000634712 GNAI1P63096 354 aa20.42■□□□□ 0.86
LINC00339-207ENST00000634712 KIF6Q6ZMV9 814 aa20.42■□□□□ 0.86
LINC00339-207ENST00000634712 PXDNLA1KZ92 1463 aa20.42■□□□□ 0.86
LINC00339-207ENST00000634712 GOLGB1Q14789 3259 aaKnown RBP20.41■□□□□ 0.86
LINC00339-207ENST00000634712 KIF13BQ9NQT8 1826 aa20.41■□□□□ 0.86
LINC00339-207ENST00000634712 CARMIL3Q8ND23 1372 aa20.41■□□□□ 0.86
LINC00339-207ENST00000634712 FAM9BQ8IZU0 186 aa20.41■□□□□ 0.86
LINC00339-207ENST00000634712 NECTIN2Q92692 538 aa20.41■□□□□ 0.86
LINC00339-207ENST00000634712 IFT57Q9NWB7 429 aa20.41■□□□□ 0.86
LINC00339-207ENST00000634712 BCS1LQ9Y276 419 aa20.41■□□□□ 0.86
LINC00339-207ENST00000634712 SENP3-EIF4A1A0A087X0R7 540 aa20.4■□□□□ 0.86
LINC00339-207ENST00000634712 PIM2Q9P1W9 311 aa20.4■□□□□ 0.86
LINC00339-207ENST00000634712 SCN7AQ01118 1682 aa20.39■□□□□ 0.85
LINC00339-207ENST00000634712 RGL2O15211 777 aa20.39■□□□□ 0.85
LINC00339-207ENST00000634712 MBIPQ9NS73 344 aa20.39■□□□□ 0.85
LINC00339-207ENST00000634712 N4BP2Q86UW6 1770 aaPredicted RBP20.39■□□□□ 0.85
LINC00339-207ENST00000634712 ERVV-1B6SEH8 477 aa20.38■□□□□ 0.85
LINC00339-207ENST00000634712 KRT24Q2M2I5 525 aa20.38■□□□□ 0.85
LINC00339-207ENST00000634712 NIP7Q9Y221 180 aaKnown RBP eCLIP20.38■□□□□ 0.85
LINC00339-207ENST00000634712 AFDNP55196 1824 aaKnown RBP20.37■□□□□ 0.85
LINC00339-207ENST00000634712 ZNF853P0CG23 659 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms