RNA–Protein interactions for RNA: ENST00000633364.1

LIMS4-205, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 957 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-205ENST00000633364 HEG1Q9ULI3 1381 aa20.53■□□□□ 0.88
LIMS4-205ENST00000633364 USPL1Q5W0Q7 1092 aa20.52■□□□□ 0.88
LIMS4-205ENST00000633364 COL15A1P39059 1388 aa20.51■□□□□ 0.87
LIMS4-205ENST00000633364 C4AP0C0L4 1744 aa20.51■□□□□ 0.87
LIMS4-205ENST00000633364 FKBP8Q14318 412 aa20.51■□□□□ 0.87
LIMS4-205ENST00000633364 UBR2Q8IWV8 1755 aa20.51■□□□□ 0.87
LIMS4-205ENST00000633364 SIPA1L3O60292 1781 aaPredicted RBP20.5■□□□□ 0.87
LIMS4-205ENST00000633364 A0A087WZG4 1122 aa20.5■□□□□ 0.87
LIMS4-205ENST00000633364 KCNQ3O43525 872 aa20.5■□□□□ 0.87
LIMS4-205ENST00000633364 TAF7Q15545 349 aaPredicted RBP20.5■□□□□ 0.87
LIMS4-205ENST00000633364 NFE2L2Q16236 605 aa20.5■□□□□ 0.87
LIMS4-205ENST00000633364 PLEKHF1Q96S99 279 aa20.5■□□□□ 0.87
LIMS4-205ENST00000633364 WWC3Q9ULE0 1092 aa20.5■□□□□ 0.87
LIMS4-205ENST00000633364 YBX3P16989 372 aaKnown RBP eCLIP20.49■□□□□ 0.87
LIMS4-205ENST00000633364 NARFQ9UHQ1 456 aa20.49■□□□□ 0.87
LIMS4-205ENST00000633364 TGFB2P61812 414 aa20.48■□□□□ 0.87
LIMS4-205ENST00000633364 WDR43Q15061 677 aaKnown RBP eCLIP20.48■□□□□ 0.87
LIMS4-205ENST00000633364 CHD4Q14839 1912 aa20.48■□□□□ 0.87
LIMS4-205ENST00000633364 PNISRQ8TF01 805 aaKnown RBP20.47■□□□□ 0.87
LIMS4-205ENST00000633364 UTRNP46939 3433 aa20.47■□□□□ 0.87
LIMS4-205ENST00000633364 SNRPA1P09661 255 aaKnown RBP20.46■□□□□ 0.87
LIMS4-205ENST00000633364 A1BGP04217 495 aa20.45■□□□□ 0.86
LIMS4-205ENST00000633364 IL6STP40189 918 aaPredicted RBP20.45■□□□□ 0.86
LIMS4-205ENST00000633364 EIF5P55010 431 aaKnown RBP20.45■□□□□ 0.86
LIMS4-205ENST00000633364 MIS18AQ9NYP9 233 aa20.45■□□□□ 0.86
LIMS4-205ENST00000633364 A0A0G2JLW4 131 aa20.44■□□□□ 0.86
LIMS4-205ENST00000633364 PRKRIP1Q9H875 184 aaPredicted RBP20.44■□□□□ 0.86
LIMS4-205ENST00000633364 USP16Q9Y5T5 823 aa20.44■□□□□ 0.86
LIMS4-205ENST00000633364 C10orf71Q711Q0 1435 aa20.44■□□□□ 0.86
LIMS4-205ENST00000633364 TM4SF1P30408 202 aa20.43■□□□□ 0.86
LIMS4-205ENST00000633364 RIPK4P57078 832 aa20.43■□□□□ 0.86
LIMS4-205ENST00000633364 DDR1Q08345 913 aa20.43■□□□□ 0.86
LIMS4-205ENST00000633364 BICDL1Q6ZP65 573 aa20.43■□□□□ 0.86
LIMS4-205ENST00000633364 TBC1D2BQ9UPU7 963 aa20.43■□□□□ 0.86
LIMS4-205ENST00000633364 POLRMTO00411 1230 aaKnown RBP20.42■□□□□ 0.86
LIMS4-205ENST00000633364 LMOD3Q0VAK6 560 aa20.42■□□□□ 0.86
LIMS4-205ENST00000633364 NFIXQ14938 502 aa20.42■□□□□ 0.86
LIMS4-205ENST00000633364 THUMPD2Q9BTF0 503 aaKnown RBP20.42■□□□□ 0.86
LIMS4-205ENST00000633364 BCS1LQ9Y276 419 aa20.42■□□□□ 0.86
LIMS4-205ENST00000633364 DLG5Q8TDM6 1919 aa20.42■□□□□ 0.86
LIMS4-205ENST00000633364 GOLGB1Q14789 3259 aaKnown RBP20.42■□□□□ 0.86
LIMS4-205ENST00000633364 PRAMEF22A3QJZ6 481 aa20.41■□□□□ 0.86
LIMS4-205ENST00000633364 DPEP1P16444 411 aa20.41■□□□□ 0.86
LIMS4-205ENST00000633364 ZNF784Q8NCA9 323 aaPredicted RBP20.41■□□□□ 0.86
LIMS4-205ENST00000633364 PXDNLA1KZ92 1463 aa20.4■□□□□ 0.86
LIMS4-205ENST00000633364 SERPINB2P05120 415 aa20.4■□□□□ 0.86
LIMS4-205ENST00000633364 NEUROD2Q15784 382 aa20.4■□□□□ 0.86
LIMS4-205ENST00000633364 CCDC146Q8IYE0 955 aa20.4■□□□□ 0.86
LIMS4-205ENST00000633364 TMPOP42166 694 aaKnown RBP20.39■□□□□ 0.85
LIMS4-205ENST00000633364 PIP4K2AP48426 406 aaPredicted RBP20.39■□□□□ 0.85
LIMS4-205ENST00000633364 DZIP3Q86Y13 1208 aaKnown RBP20.39■□□□□ 0.85
LIMS4-205ENST00000633364 BCL2L12Q9HB09 334 aa20.39■□□□□ 0.85
LIMS4-205ENST00000633364 KIF13BQ9NQT8 1826 aa20.39■□□□□ 0.85
LIMS4-205ENST00000633364 NPHP1O15259 732 aa20.38■□□□□ 0.85
LIMS4-205ENST00000633364 RUNDC1Q96C34 613 aa20.38■□□□□ 0.85
LIMS4-205ENST00000633364 PIM2Q9P1W9 311 aa20.38■□□□□ 0.85
LIMS4-205ENST00000633364 TSPYL4Q9UJ04 414 aa20.38■□□□□ 0.85
LIMS4-205ENST00000633364 RRP7AQ9Y3A4 280 aaKnown RBP20.38■□□□□ 0.85
LIMS4-205ENST00000633364 N4BP2Q86UW6 1770 aaPredicted RBP20.38■□□□□ 0.85
LIMS4-205ENST00000633364 ZNF316A6NFI3 1004 aaPredicted RBP20.36■□□□□ 0.85
LIMS4-205ENST00000633364 TBC1D9BQ66K14 1250 aa20.36■□□□□ 0.85
LIMS4-205ENST00000633364 ADAMTS8Q9UP79 889 aa20.36■□□□□ 0.85
LIMS4-205ENST00000633364 DALRD3Q5D0E6 543 aaKnown RBP20.35■□□□□ 0.85
LIMS4-205ENST00000633364 SETDB2Q96T68 719 aa20.35■□□□□ 0.85
LIMS4-205ENST00000633364 ZNF652Q9Y2D9 606 aa20.35■□□□□ 0.85
LIMS4-205ENST00000633364 CHRNA5P30532 468 aa20.34■□□□□ 0.85
LIMS4-205ENST00000633364 EIF4A1P60842 406 aaKnown RBP20.34■□□□□ 0.85
LIMS4-205ENST00000633364 ARHGAP27Q6ZUM4 889 aa20.34■□□□□ 0.85
LIMS4-205ENST00000633364 GIGYF1O75420 1035 aaPredicted RBP20.33■□□□□ 0.85
LIMS4-205ENST00000633364 CAMTA2O94983 1202 aa20.33■□□□□ 0.85
LIMS4-205ENST00000633364 NGEFQ8N5V2 710 aa20.33■□□□□ 0.85
LIMS4-205ENST00000633364 KCNA3P22001 575 aa20.32■□□□□ 0.84
LIMS4-205ENST00000633364 LAS1LQ9Y4W2 734 aaKnown RBP20.32■□□□□ 0.84
LIMS4-205ENST00000633364 CARMIL3Q8ND23 1372 aa20.32■□□□□ 0.84
LIMS4-205ENST00000633364 NBPF26B4DH59 902 aa20.31■□□□□ 0.84
LIMS4-205ENST00000633364 NBPF10Q6P3W6 841 aaKnown RBP20.31■□□□□ 0.84
LIMS4-205ENST00000633364 NBPF15Q8N660 670 aa20.31■□□□□ 0.84
LIMS4-205ENST00000633364 BABAM1Q9NWV8 329 aa20.31■□□□□ 0.84
LIMS4-205ENST00000633364 KDM3BQ7LBC6 1761 aa20.31■□□□□ 0.84
LIMS4-205ENST00000633364 KIAA1551Q9HCM1 1747 aa20.3■□□□□ 0.84
LIMS4-205ENST00000633364 AFDNP55196 1824 aaKnown RBP20.3■□□□□ 0.84
LIMS4-205ENST00000633364 SCN7AQ01118 1682 aa20.3■□□□□ 0.84
LIMS4-205ENST00000633364 H0YIN7 160 aa20.3■□□□□ 0.84
LIMS4-205ENST00000633364 CLEC4GQ6UXB4 293 aa20.3■□□□□ 0.84
LIMS4-205ENST00000633364 C2CD5Q86YS7 1000 aa20.3■□□□□ 0.84
LIMS4-205ENST00000633364 MYL6BP14649 208 aa20.29■□□□□ 0.84
LIMS4-205ENST00000633364 PDE6BP35913 854 aa20.29■□□□□ 0.84
LIMS4-205ENST00000633364 ST5P78524 1137 aa20.29■□□□□ 0.84
LIMS4-205ENST00000633364 CNBD1Q8NA66 436 aa20.29■□□□□ 0.84
LIMS4-205ENST00000633364 ANP32CO43423 234 aa20.28■□□□□ 0.84
LIMS4-205ENST00000633364 EIF2S2P20042 333 aaKnown RBP20.28■□□□□ 0.84
LIMS4-205ENST00000633364 KIF6Q6ZMV9 814 aa20.28■□□□□ 0.84
LIMS4-205ENST00000633364 NBPF5PQ86XG9 351 aaPredicted RBP20.28■□□□□ 0.84
LIMS4-205ENST00000633364 LAMB4A4D0S4 1761 aa20.27■□□□□ 0.84
LIMS4-205ENST00000633364 PRR5LQ6MZQ0 368 aa20.27■□□□□ 0.84
LIMS4-205ENST00000633364 CCDC24Q8N4L8 307 aa20.27■□□□□ 0.84
LIMS4-205ENST00000633364 BRIP1Q9BX63 1249 aa20.27■□□□□ 0.84
LIMS4-205ENST00000633364 PDZRN3Q9UPQ7 1066 aa20.27■□□□□ 0.84
LIMS4-205ENST00000633364 TTLL6Q8N841 843 aa20.26■□□□□ 0.83
LIMS4-205ENST00000633364 ZNF526Q8TF50 670 aaPredicted RBP20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms