RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 IFT74Q96LB3 600 aa5.73□□□□□ -1.49
VPS13D-213ENST00000613099 WDR78Q5VTH9 848 aa5.73□□□□□ -1.49
VPS13D-213ENST00000613099 TRHP20396 242 aaPredicted RBP5.73□□□□□ -1.49
VPS13D-213ENST00000613099 SCAND2PQ9GZW5 306 aaPredicted RBP5.73□□□□□ -1.49
VPS13D-213ENST00000613099 LUC7L2Q9Y383 392 aaKnown RBP5.73□□□□□ -1.49
VPS13D-213ENST00000613099 SRGAP3O43295 1099 aa5.73□□□□□ -1.49
VPS13D-213ENST00000613099 LACTBP83111 547 aaPredicted RBP5.73□□□□□ -1.49
VPS13D-213ENST00000613099 TCP11Q8WWU5 503 aa5.73□□□□□ -1.49
VPS13D-213ENST00000613099 CHCHD3Q9NX63 227 aaKnown RBP5.73□□□□□ -1.49
VPS13D-213ENST00000613099 SOS1Q07889 1333 aaPredicted RBP5.73□□□□□ -1.49
VPS13D-213ENST00000613099 TAX1BP1Q86VP1 789 aa5.73□□□□□ -1.49
VPS13D-213ENST00000613099 ANO10Q9NW15 660 aa5.73□□□□□ -1.49
VPS13D-213ENST00000613099 SATB2Q9UPW6 733 aa5.73□□□□□ -1.49
VPS13D-213ENST00000613099 SERPINC1P01008 464 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 RASSF8Q8NHQ8 419 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 DDX12PQ92771 950 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 PFDN1O60925 122 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 NLRP5P59047 1200 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 BRD3Q15059 726 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 ZMYM4Q5VZL5 1548 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 CCDC186Q7Z3E2 898 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 SAAL1Q96ER3 474 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 KDM4AO75164 1064 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 KIF4AO95239 1232 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 SMC1AQ14683 1233 aaKnown RBP5.72□□□□□ -1.49
VPS13D-213ENST00000613099 L3MBTL2Q969R5 705 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 GRIPAP1Q4V328 841 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 EHBP1Q8NDI1 1231 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 TBC1D31Q96DN5 1066 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 SOGA1O94964 1423 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 RWDD2BP57060 319 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 SYNE3Q6ZMZ3 975 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 CABS1Q96KC9 395 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 GBP5Q96PP8 586 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 RPGRIP1LQ68CZ1 1315 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 AFAP1L1Q8TED9 768 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 TTC12Q9H892 705 aaPredicted RBP5.72□□□□□ -1.49
VPS13D-213ENST00000613099 ITGB1BP2Q9UKP3 347 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 PCK1P35558 622 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 IFFO1Q0D2I5 559 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 MRFAP1L1Q96HT8 127 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 UIMC1Q96RL1 719 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 MED4Q9NPJ6 270 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 ATP11AP98196 1134 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 TSNAXIP1Q2TAA8 658 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 CALR3Q96L12 384 aaKnown RBP5.72□□□□□ -1.49
VPS13D-213ENST00000613099 PANK1Q8TE04 598 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 CFAP57Q96MR6 1250 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 VIRMAQ69YN4 1812 aaKnown RBP5.72□□□□□ -1.49
VPS13D-213ENST00000613099 HNRNPH2P55795 449 aaKnown RBP5.72□□□□□ -1.49
VPS13D-213ENST00000613099 JMYQ8N9B5 988 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 FBF1Q8TES7 1133 aa5.72□□□□□ -1.49
VPS13D-213ENST00000613099 NBPF7P0C2Y1 421 aaPredicted RBP5.71□□□□□ -1.49
VPS13D-213ENST00000613099 E2F4Q16254 413 aa5.71□□□□□ -1.49
VPS13D-213ENST00000613099 FAM200AQ8TCP9 573 aa5.71□□□□□ -1.49
VPS13D-213ENST00000613099 UTP14AQ9BVJ6 771 aaKnown RBP5.71□□□□□ -1.49
VPS13D-213ENST00000613099 DACH1Q9UI36 760 aa5.71□□□□□ -1.49
VPS13D-213ENST00000613099 SSFA2P28290 1259 aa5.71□□□□□ -1.49
VPS13D-213ENST00000613099 DYNC1I2Q13409 638 aaKnown RBP5.71□□□□□ -1.49
VPS13D-213ENST00000613099 DDX41Q9UJV9 622 aaKnown RBP5.71□□□□□ -1.49
VPS13D-213ENST00000613099 VPS37CA5D8V6 355 aaPredicted RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 HSF2BPO75031 334 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 MX1P20591 662 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 CCDC65Q8IXS2 484 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 IQCGQ9H095 443 aaKnown RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 SBNO1A3KN83 1393 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 TRMT1Q9NXH9 659 aaKnown RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 MORC2Q9Y6X9 1032 aaPredicted RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 FIBPO43427 364 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 DHX16O60231 1041 aaKnown RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 ZFXP17010 805 aaPredicted RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 CASTP20810 708 aaKnown RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 GBP1P32455 592 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 SNCBQ16143 134 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 ZNF513Q8N8E2 541 aaPredicted RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 GCC1Q96CN9 775 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 TTC14Q96N46 770 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 MYO1CO00159 1063 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 PPFIA2O75334 1257 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 KIF4BQ2VIQ3 1234 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 CFAP74Q9C0B2 1584 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 ERC2O15083 957 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 MXRA7P84157 204 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 SLFNL1Q499Z3 407 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 DDX27Q96GQ7 796 aaKnown RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 CTAGE15A4D2H0 777 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 CTAGE8P0CG41 777 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 RGL3Q3MIN7 710 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 CTAGE6Q86UF2 777 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 CTAGE4Q8IX94 777 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 ACTN2P35609 894 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 SYT10Q6XYQ8 523 aa5.71□□□□□ -1.5
VPS13D-213ENST00000613099 JPH2Q9BR39 696 aaPredicted RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 DDX19AQ9NUU7 478 aaKnown RBP5.71□□□□□ -1.5
VPS13D-213ENST00000613099 STX1AQ16623 288 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 CEP63Q96MT8 703 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 SHROOM2Q13796 1616 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 KIF14Q15058 1648 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 EPB41L2O43491 1005 aaKnown RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms