RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 KCNQ3O43525 872 aa11.49□□□□□ -0.57
SMAD4-217ENST00000611848 CALD1Q05682 793 aaKnown RBP11.49□□□□□ -0.57
SMAD4-217ENST00000611848 CCDC27Q2M243 656 aa11.49□□□□□ -0.57
SMAD4-217ENST00000611848 RNF39Q9H2S5 420 aa11.49□□□□□ -0.57
SMAD4-217ENST00000611848 KDM3BQ7LBC6 1761 aa11.49□□□□□ -0.57
SMAD4-217ENST00000611848 UBR3Q6ZT12 1888 aa11.48□□□□□ -0.57
SMAD4-217ENST00000611848 DNAJC10Q8IXB1 793 aa11.48□□□□□ -0.57
SMAD4-217ENST00000611848 NGEFQ8N5V2 710 aa11.48□□□□□ -0.57
SMAD4-217ENST00000611848 MIS18AQ9NYP9 233 aa11.48□□□□□ -0.57
SMAD4-217ENST00000611848 PNPLA7Q6ZV29 1317 aa11.48□□□□□ -0.57
SMAD4-217ENST00000611848 CASZ1Q86V15 1759 aa11.47□□□□□ -0.57
SMAD4-217ENST00000611848 STARD3NLO95772 234 aa11.47□□□□□ -0.57
SMAD4-217ENST00000611848 SSFA2P28290 1259 aa11.47□□□□□ -0.57
SMAD4-217ENST00000611848 SLC16A10Q8TF71 515 aa11.47□□□□□ -0.57
SMAD4-217ENST00000611848 TSPYL4Q9UJ04 414 aa11.47□□□□□ -0.57
SMAD4-217ENST00000611848 GNPATO15228 680 aa11.46□□□□□ -0.57
SMAD4-217ENST00000611848 SNRPA1P09661 255 aaKnown RBP11.46□□□□□ -0.57
SMAD4-217ENST00000611848 CYP19A1P11511 503 aaPredicted RBP11.46□□□□□ -0.57
SMAD4-217ENST00000611848 CRKLP46109 303 aaKnown RBP11.46□□□□□ -0.57
SMAD4-217ENST00000611848 EIF4A1P60842 406 aaKnown RBP11.46□□□□□ -0.57
SMAD4-217ENST00000611848 CFAP44Q96MT7 982 aa11.46□□□□□ -0.57
SMAD4-217ENST00000611848 RTCBQ9Y3I0 505 aaKnown RBP11.46□□□□□ -0.57
SMAD4-217ENST00000611848 CHL1O00533 1208 aa11.46□□□□□ -0.58
SMAD4-217ENST00000611848 RPS6KA4O75676 772 aa11.46□□□□□ -0.58
SMAD4-217ENST00000611848 RNF123Q5XPI4 1314 aa11.45□□□□□ -0.58
SMAD4-217ENST00000611848 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.45□□□□□ -0.58
SMAD4-217ENST00000611848 TRAPPC3LQ5T215 181 aa11.45□□□□□ -0.58
SMAD4-217ENST00000611848 INTS5Q6P9B9 1019 aaKnown RBP11.45□□□□□ -0.58
SMAD4-217ENST00000611848 COL23A1Q86Y22 540 aaPredicted RBP11.45□□□□□ -0.58
SMAD4-217ENST00000611848 WWC1Q8IX03 1113 aa11.45□□□□□ -0.58
SMAD4-217ENST00000611848 PDGFDQ9GZP0 370 aaPredicted RBP11.45□□□□□ -0.58
SMAD4-217ENST00000611848 MTFR1LQ9H019 292 aa11.45□□□□□ -0.58
SMAD4-217ENST00000611848 CCDC87Q9NVE4 849 aa11.45□□□□□ -0.58
SMAD4-217ENST00000611848 IFT57Q9NWB7 429 aa11.45□□□□□ -0.58
SMAD4-217ENST00000611848 LAS1LQ9Y4W2 734 aaKnown RBP11.45□□□□□ -0.58
SMAD4-217ENST00000611848 GIGYF1O75420 1035 aaPredicted RBP11.44□□□□□ -0.58
SMAD4-217ENST00000611848 ZNF853P0CG23 659 aa11.44□□□□□ -0.58
SMAD4-217ENST00000611848 GNAI1P63096 354 aa11.44□□□□□ -0.58
SMAD4-217ENST00000611848 SPON1Q9HCB6 807 aa11.44□□□□□ -0.58
SMAD4-217ENST00000611848 PHF14O94880 888 aa11.43□□□□□ -0.58
SMAD4-217ENST00000611848 ZBTB7AO95365 584 aa11.43□□□□□ -0.58
SMAD4-217ENST00000611848 AMIGO3Q86WK7 504 aa11.43□□□□□ -0.58
SMAD4-217ENST00000611848 ZBTB1Q9Y2K1 713 aa11.43□□□□□ -0.58
SMAD4-217ENST00000611848 USP16Q9Y5T5 823 aa11.43□□□□□ -0.58
SMAD4-217ENST00000611848 IL16Q14005 1332 aa11.43□□□□□ -0.58
SMAD4-217ENST00000611848 WDR63Q8IWG1 891 aa11.42□□□□□ -0.58
SMAD4-217ENST00000611848 SOS1Q07889 1333 aaPredicted RBP11.42□□□□□ -0.58
SMAD4-217ENST00000611848 LAMB4A4D0S4 1761 aa11.42□□□□□ -0.58
SMAD4-217ENST00000611848 SENP3-EIF4A1A0A087X0R7 540 aa11.42□□□□□ -0.58
SMAD4-217ENST00000611848 PRAMEF22A3QJZ6 481 aa11.42□□□□□ -0.58
SMAD4-217ENST00000611848 ARHGEF1Q92888 912 aaKnown RBP11.42□□□□□ -0.58
SMAD4-217ENST00000611848 TSHZ2Q9NRE2 1034 aa11.42□□□□□ -0.58
SMAD4-217ENST00000611848 MBIPQ9NS73 344 aa11.42□□□□□ -0.58
SMAD4-217ENST00000611848 SALL2Q9Y467 1007 aaPredicted RBP11.42□□□□□ -0.58
SMAD4-217ENST00000611848 LRP5O75197 1615 aa11.41□□□□□ -0.58
SMAD4-217ENST00000611848 CANXP27824 592 aaKnown RBP11.41□□□□□ -0.58
SMAD4-217ENST00000611848 RFC4P35249 363 aa11.41□□□□□ -0.58
SMAD4-217ENST00000611848 IL6STP40189 918 aaPredicted RBP11.41□□□□□ -0.58
SMAD4-217ENST00000611848 EIF5P55010 431 aaKnown RBP11.41□□□□□ -0.58
SMAD4-217ENST00000611848 IRX6P78412 446 aaPredicted RBP11.41□□□□□ -0.58
SMAD4-217ENST00000611848 SMIM5Q71RC9 77 aa11.41□□□□□ -0.58
SMAD4-217ENST00000611848 NPM2Q86SE8 214 aaKnown RBP11.41□□□□□ -0.58
SMAD4-217ENST00000611848 PPP4R2Q9NY27 417 aa11.41□□□□□ -0.58
SMAD4-217ENST00000611848 ATF5Q9Y2D1 282 aaPredicted RBP11.41□□□□□ -0.58
SMAD4-217ENST00000611848 COL24A1Q17RW2 1714 aa11.4□□□□□ -0.58
SMAD4-217ENST00000611848 A0A087WZG4 1122 aa11.4□□□□□ -0.58
SMAD4-217ENST00000611848 A1BGP04217 495 aa11.4□□□□□ -0.58
SMAD4-217ENST00000611848 HOXB7P09629 217 aa11.4□□□□□ -0.58
SMAD4-217ENST00000611848 COL15A1P39059 1388 aa11.39□□□□□ -0.59
SMAD4-217ENST00000611848 ERBB4Q15303 1308 aa11.39□□□□□ -0.59
SMAD4-217ENST00000611848 POLD1P28340 1107 aa11.39□□□□□ -0.59
SMAD4-217ENST00000611848 PTGER2P43116 358 aa11.39□□□□□ -0.59
SMAD4-217ENST00000611848 C4AP0C0L4 1744 aa11.39□□□□□ -0.59
SMAD4-217ENST00000611848 ZPR1O75312 459 aa11.38□□□□□ -0.59
SMAD4-217ENST00000611848 NLGN1Q8N2Q7 840 aa11.38□□□□□ -0.59
SMAD4-217ENST00000611848 SGIP1Q9BQI5 828 aa11.38□□□□□ -0.59
SMAD4-217ENST00000611848 NARFQ9UHQ1 456 aa11.38□□□□□ -0.59
SMAD4-217ENST00000611848 ZNF521Q96K83 1311 aa11.38□□□□□ -0.59
SMAD4-217ENST00000611848 USP42Q9H9J4 1324 aaKnown RBP11.38□□□□□ -0.59
SMAD4-217ENST00000611848 EIF2S2P20042 333 aaKnown RBP11.38□□□□□ -0.59
SMAD4-217ENST00000611848 CHMP4AQ9BY43 222 aa11.38□□□□□ -0.59
SMAD4-217ENST00000611848 NBPF26B4DH59 902 aa11.37□□□□□ -0.59
SMAD4-217ENST00000611848 GYS1P13807 737 aa11.37□□□□□ -0.59
SMAD4-217ENST00000611848 DUSP27Q5VZP5 1158 aa11.37□□□□□ -0.59
SMAD4-217ENST00000611848 MSL1Q68DK7 614 aa11.37□□□□□ -0.59
SMAD4-217ENST00000611848 NBPF10Q6P3W6 841 aaKnown RBP11.37□□□□□ -0.59
SMAD4-217ENST00000611848 NBPF15Q8N660 670 aa11.37□□□□□ -0.59
SMAD4-217ENST00000611848 PPP1R1BQ9UD71 204 aaPredicted RBP11.37□□□□□ -0.59
SMAD4-217ENST00000611848 ZNF330Q9Y3S2 320 aaPredicted RBP11.37□□□□□ -0.59
SMAD4-217ENST00000611848 KRT24Q2M2I5 525 aa11.36□□□□□ -0.59
SMAD4-217ENST00000611848 SRP68Q9UHB9 627 aaKnown RBP11.36□□□□□ -0.59
SMAD4-217ENST00000611848 SRCAPQ6ZRS2 3230 aa11.36□□□□□ -0.59
SMAD4-217ENST00000611848 PIP4K2AP48426 406 aaPredicted RBP11.35□□□□□ -0.59
SMAD4-217ENST00000611848 GOLGA2Q08379 1002 aa11.35□□□□□ -0.59
SMAD4-217ENST00000611848 HDGFL1Q5TGJ6 251 aa11.35□□□□□ -0.59
SMAD4-217ENST00000611848 USPL1Q5W0Q7 1092 aa11.35□□□□□ -0.59
SMAD4-217ENST00000611848 TSR2Q969E8 191 aaKnown RBP11.35□□□□□ -0.59
SMAD4-217ENST00000611848 ARXQ96QS3 562 aa11.35□□□□□ -0.59
SMAD4-217ENST00000611848 MYH16Q9H6N6 1097 aa11.35□□□□□ -0.59
SMAD4-217ENST00000611848 FANCIQ9NVI1 1328 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms