RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PROM2Q8N271 834 aa18.45■□□□□ 0.54
UPF1-211ENST00000600868 ERBB4Q15303 1308 aa18.45■□□□□ 0.54
UPF1-211ENST00000600868 CAMKK2Q96RR4 588 aa18.44■□□□□ 0.54
UPF1-211ENST00000600868 RCAN3Q9UKA8 241 aa18.44■□□□□ 0.54
UPF1-211ENST00000600868 COL5A3P25940 1745 aaPredicted RBP18.43■□□□□ 0.54
UPF1-211ENST00000600868 LINC00116Q8NCU8 138 aa18.43■□□□□ 0.54
UPF1-211ENST00000600868 SSH1Q8WYL5 1049 aa18.43■□□□□ 0.54
UPF1-211ENST00000600868 NECTIN2Q92692 538 aa18.43■□□□□ 0.54
UPF1-211ENST00000600868 LRRC4BQ9NT99 713 aa18.43■□□□□ 0.54
UPF1-211ENST00000600868 TAF1LQ8IZX4 1826 aa18.42■□□□□ 0.54
UPF1-211ENST00000600868 BRPF1P55201 1214 aaPredicted RBP18.42■□□□□ 0.54
UPF1-211ENST00000600868 KCNQ4P56696 695 aa18.42■□□□□ 0.54
UPF1-211ENST00000600868 UPF1Q92900 1129 aaKnown RBP eCLIP18.42■□□□□ 0.54
UPF1-211ENST00000600868 STK31Q9BXU1 1019 aa18.42■□□□□ 0.54
UPF1-211ENST00000600868 DBF4Q9UBU7 674 aaPredicted RBP18.42■□□□□ 0.54
UPF1-211ENST00000600868 EN1Q05925 392 aaPredicted RBP18.41■□□□□ 0.54
UPF1-211ENST00000600868 PDIA6Q15084 440 aa18.41■□□□□ 0.54
UPF1-211ENST00000600868 RC3H1Q5TC82 1133 aaKnown RBP18.41■□□□□ 0.54
UPF1-211ENST00000600868 DDX21Q9NR30 783 aaKnown RBP eCLIP18.41■□□□□ 0.54
UPF1-211ENST00000600868 CHPF2Q9P2E5 772 aa18.41■□□□□ 0.54
UPF1-211ENST00000600868 CNTNAP4Q9C0A0 1308 aa18.41■□□□□ 0.54
UPF1-211ENST00000600868 CACNA1FO60840 1977 aa18.41■□□□□ 0.54
UPF1-211ENST00000600868 A1BGP04217 495 aa18.4■□□□□ 0.54
UPF1-211ENST00000600868 CRKLP46109 303 aaKnown RBP18.4■□□□□ 0.54
UPF1-211ENST00000600868 EZH2Q15910 746 aaKnown RBP18.4■□□□□ 0.54
UPF1-211ENST00000600868 INTS5Q6P9B9 1019 aaKnown RBP18.4■□□□□ 0.54
UPF1-211ENST00000600868 MRPL50Q8N5N7 158 aaKnown RBP18.4■□□□□ 0.54
UPF1-211ENST00000600868 SMC4Q9NTJ3 1288 aa18.4■□□□□ 0.54
UPF1-211ENST00000600868 CCDC87Q9NVE4 849 aa18.4■□□□□ 0.54
UPF1-211ENST00000600868 RREB1Q92766 1687 aa18.4■□□□□ 0.54
UPF1-211ENST00000600868 NBPF26B4DH59 902 aa18.39■□□□□ 0.53
UPF1-211ENST00000600868 TCERG1O14776 1098 aaKnown RBP18.39■□□□□ 0.53
UPF1-211ENST00000600868 SLC4A2P04920 1241 aa18.39■□□□□ 0.53
UPF1-211ENST00000600868 NBPF14Q5TI25 921 aa18.39■□□□□ 0.53
UPF1-211ENST00000600868 NBPF10Q6P3W6 841 aaKnown RBP18.39■□□□□ 0.53
UPF1-211ENST00000600868 DEFB132Q7Z7B7 95 aa18.39■□□□□ 0.53
UPF1-211ENST00000600868 NBPF15Q8N660 670 aa18.39■□□□□ 0.53
UPF1-211ENST00000600868 HYPKQ9NX55 129 aa18.39■□□□□ 0.53
UPF1-211ENST00000600868 C4BP0C0L5 1744 aa18.38■□□□□ 0.53
UPF1-211ENST00000600868 BCAR3O75815 825 aa18.38■□□□□ 0.53
UPF1-211ENST00000600868 PROSER3Q2NL68 480 aa18.38■□□□□ 0.53
UPF1-211ENST00000600868 LRP10Q7Z4F1 713 aa18.38■□□□□ 0.53
UPF1-211ENST00000600868 ZBTB1Q9Y2K1 713 aa18.38■□□□□ 0.53
UPF1-211ENST00000600868 MYH14Q7Z406 1995 aaKnown RBP18.38■□□□□ 0.53
UPF1-211ENST00000600868 BCL2L13Q9BXK5 485 aa18.37■□□□□ 0.53
UPF1-211ENST00000600868 ANXA1P04083 346 aa18.36■□□□□ 0.53
UPF1-211ENST00000600868 IL6STP40189 918 aaPredicted RBP18.36■□□□□ 0.53
UPF1-211ENST00000600868 KIF16BQ96L93 1317 aa18.35■□□□□ 0.53
UPF1-211ENST00000600868 MYL6BP14649 208 aa18.35■□□□□ 0.53
UPF1-211ENST00000600868 CANXP27824 592 aaKnown RBP18.35■□□□□ 0.53
UPF1-211ENST00000600868 PIP4K2AP48426 406 aaPredicted RBP18.35■□□□□ 0.53
UPF1-211ENST00000600868 RPS6KA4O75676 772 aa18.34■□□□□ 0.53
UPF1-211ENST00000600868 EIF5P55010 431 aaKnown RBP18.34■□□□□ 0.53
UPF1-211ENST00000600868 G2E3Q7L622 706 aa18.34■□□□□ 0.53
UPF1-211ENST00000600868 AK7Q96M32 723 aa18.34■□□□□ 0.53
UPF1-211ENST00000600868 PTPRCP08575 1304 aa18.33■□□□□ 0.53
UPF1-211ENST00000600868 FLIIQ13045 1269 aa18.33■□□□□ 0.52
UPF1-211ENST00000600868 ARHGAP45Q92619 1136 aa18.33■□□□□ 0.52
UPF1-211ENST00000600868 PHAXQ9H814 394 aaKnown RBP18.33■□□□□ 0.52
UPF1-211ENST00000600868 RTCBQ9Y3I0 505 aaKnown RBP18.33■□□□□ 0.52
UPF1-211ENST00000600868 NUP188Q5SRE5 1749 aa18.32■□□□□ 0.52
UPF1-211ENST00000600868 GNPATO15228 680 aa18.32■□□□□ 0.52
UPF1-211ENST00000600868 IPO8O15397 1037 aaKnown RBP18.32■□□□□ 0.52
UPF1-211ENST00000600868 COPS6Q7L5N1 327 aa18.32■□□□□ 0.52
UPF1-211ENST00000600868 XAGE3Q8WTP9 111 aa18.32■□□□□ 0.52
UPF1-211ENST00000600868 AKT1S1Q96B36 256 aa18.32■□□□□ 0.52
UPF1-211ENST00000600868 NOB1Q9ULX3 412 aaKnown RBP18.32■□□□□ 0.52
UPF1-211ENST00000600868 NPM2Q86SE8 214 aaKnown RBP18.31■□□□□ 0.52
UPF1-211ENST00000600868 RNF123Q5XPI4 1314 aa18.3■□□□□ 0.52
UPF1-211ENST00000600868 A0A087WZG4 1122 aa18.3■□□□□ 0.52
UPF1-211ENST00000600868 ADRA2BP18089 450 aa18.3■□□□□ 0.52
UPF1-211ENST00000600868 ZNF827Q17R98 1081 aa18.3■□□□□ 0.52
UPF1-211ENST00000600868 ZKSCAN2Q63HK3 967 aa18.3■□□□□ 0.52
UPF1-211ENST00000600868 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.3■□□□□ 0.52
UPF1-211ENST00000600868 UBR3Q6ZT12 1888 aa18.3■□□□□ 0.52
UPF1-211ENST00000600868 COL15A1P39059 1388 aa18.3■□□□□ 0.52
UPF1-211ENST00000600868 DDX58O95786 925 aaKnown RBP18.29■□□□□ 0.52
UPF1-211ENST00000600868 SSFA2P28290 1259 aa18.29■□□□□ 0.52
UPF1-211ENST00000600868 AIMP1Q12904 312 aaKnown RBP18.29■□□□□ 0.52
UPF1-211ENST00000600868 FKBP5Q13451 457 aaPredicted RBP18.29■□□□□ 0.52
UPF1-211ENST00000600868 FRAT1Q92837 279 aaPredicted RBP18.29■□□□□ 0.52
UPF1-211ENST00000600868 API5Q9BZZ5 524 aaKnown RBP18.29■□□□□ 0.52
UPF1-211ENST00000600868 ZNF330Q9Y3S2 320 aaPredicted RBP18.29■□□□□ 0.52
UPF1-211ENST00000600868 SUPT16HQ9Y5B9 1047 aaKnown RBP18.29■□□□□ 0.52
UPF1-211ENST00000600868 RRP1P56182 461 aaKnown RBP18.28■□□□□ 0.52
UPF1-211ENST00000600868 TRAPPC3LQ5T215 181 aa18.28■□□□□ 0.52
UPF1-211ENST00000600868 ATF7IPQ6VMQ6 1270 aa18.28■□□□□ 0.52
UPF1-211ENST00000600868 TTLL7Q6ZT98 887 aa18.28■□□□□ 0.52
UPF1-211ENST00000600868 ANKRD13DQ6ZTN6 518 aa18.28■□□□□ 0.52
UPF1-211ENST00000600868 STK32BQ9NY57 414 aa18.28■□□□□ 0.52
UPF1-211ENST00000600868 TRIM27P14373 513 aa18.27■□□□□ 0.52
UPF1-211ENST00000600868 SLC15A2Q16348 729 aa18.27■□□□□ 0.52
UPF1-211ENST00000600868 KSR2Q6VAB6 950 aa18.27■□□□□ 0.52
UPF1-211ENST00000600868 KIF6Q6ZMV9 814 aa18.27■□□□□ 0.52
UPF1-211ENST00000600868 AMIGO3Q86WK7 504 aa18.27■□□□□ 0.52
UPF1-211ENST00000600868 DZIP3Q86Y13 1208 aaKnown RBP18.27■□□□□ 0.52
UPF1-211ENST00000600868 FLAD1Q8NFF5 587 aa18.27■□□□□ 0.52
UPF1-211ENST00000600868 PLBD2Q8NHP8 589 aa18.27■□□□□ 0.52
UPF1-211ENST00000600868 ANO8Q9HCE9 1232 aaPredicted RBP18.27■□□□□ 0.52
UPF1-211ENST00000600868 TFCP2L1Q9NZI6 479 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms